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RNA Bioinformatics and High-Throughput Analysis Jena's Projects

bats_ncrna icon bats_ncrna

A comprehensive annotation of non-coding RNAs in available bat genome assemblies

bertax icon bertax

Taxonomic classification of DNA sequences

corfusi icon corfusi

cORFusi - correction of ORFs utilizing short-read information

epidope icon epidope

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

epitop_pred icon epitop_pred

scripts needed to generate a model which predicts epitops

magnipore icon magnipore

Magnipore: Differential single nucleotide changes of ONT signals

pcago icon pcago

Interactive web service that allows analysis of RNA-Seq read count data with PCA and clustering.

pcago-electron icon pcago-electron

Runs PCAGO as standalone desktop application using the Electron framework.

pcago-unified icon pcago-unified

PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

poseidon icon poseidon

PoSeiDon: positive selection detection and recombination analysis pipeline

read5 icon read5

Wrapper to read fast5, slow5, blow5 and pod5 files.

rnaswarm icon rnaswarm

RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

sugar icon sugar

S*R -- A Python framework for bioinformatics

vidhop icon vidhop

VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

viralclust icon viralclust

Small pipeline to cluster viral genomes based on their k-mer content. WiP

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