Topic: 3d-genome Goto Github
Some thing interesting about 3d-genome
Some thing interesting about 3d-genome
3d-genome,
Organization: 3dgenomes
3d-genome,A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Organization: aidenlab
Home Page: http://aidenlab.org
3d-genome,Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
Organization: cellular-genomics
3d-genome,FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data
Organization: cellular-genomics
3d-genome,3DGB is a workflow to build 3D models of genomes from HiC data
Organization: data-fun
3d-genome,A collection of fancy HiGlass view configs
User: flekschas
Home Page: https://flekschas.github.io/higlass-fancy
3d-genome,Visual exploration of large genome interaction matrices with interactive small multiples.
User: flekschas
Home Page: http://hipiler.higlass.io
3d-genome,Analysis of tissue-specific regulatory impacts of alcohol dependence-associated SNPs.
Organization: genome3d
3d-genome,
Organization: genome3d
3d-genome,Pipeline to investigate multimorbidity of complex traits/phenotypes by integrating chromatin interaction and expression quantitative trait loci data.
Organization: genome3d
3d-genome,Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
Organization: genome3d
3d-genome,Spectral and reproducibility analysis of Hi-C contact maps
Organization: gersteinlab
3d-genome,a method to identify TADs in Hi-C data
Organization: gersteinlab
3d-genome,Fast and flexiable Hi-C/Micro-C data analyzer
User: hellosunking
3d-genome,7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
User: ibn-salem
Home Page: https://ibn-salem.github.io/sevenC
3d-genome,
User: jlchen5
Home Page: https://github.com/jlchen5/Hi-C-Data-analysis/wiki
3d-genome,Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Organization: kundajelab
3d-genome,Processed data set of Miura et al., Nature Genetics, 2019
User: kuzobuta
3d-genome,Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
Organization: lupienlab
Home Page: https://cancerres.aacrjournals.org/content/early/2021/10/11/0008-5472.CAN-21-2056
3d-genome,single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
User: ma-compbio
3d-genome,Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
User: ma-compbio
3d-genome,single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
User: ma-compbio
3d-genome,multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
User: ma-compbio
3d-genome,
User: ma-compbio
3d-genome,single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
User: ma-compbio
3d-genome,nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
User: ma-compbio
3d-genome,nuclear compartmentalization, 3D genome, nuclear bodies, MRF
User: ma-compbio
3d-genome,Transformer-based model to predict genome-wide chromosome spatial position
User: ma-compbio
3d-genome,Nucleosome Dynamics wrappers for MuGVRE platform
Organization: nucleosome-dynamics
Home Page: http://multiscalegenomics.eu
3d-genome,CBCR: A Curriculum Based Strategy For Chromosome Reconstruction
User: oluwadarelab
3d-genome,ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction
User: oluwadarelab
3d-genome,Using Particle Swarm Algorithm for chromosome three-dimensional structure construction
User: oluwadarelab
3d-genome,A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction
User: oluwadarelab
3d-genome,A cool place to store your Hi-C
Organization: open2c
Home Page: https://open2c.github.io/cooler
3d-genome,flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)
Organization: open2c
3d-genome,Deep Learning of Sequence Patterns for CTCF-Mediated Chromatin Loop Formation
User: shuzhenkuang
3d-genome,DeepLncCTCF for identification and analysis of consensus RNA motifs binding to the genome regulator CTCF
User: shuzhenkuang
3d-genome,DiffDomain is a statistically sound method for detecting differential TADs between conditions
User: tian-dechao
3d-genome,Data and the co-authored network I extracted for lab selection in 3D genome research field
User: xiaotaowang
3d-genome,A fast and efficient tool for converting chromatin interaction data between genome assemblies
User: xiaotaowang
3d-genome,Accurate and flexible loops calling tool for 3D genomic data.
User: yaqiangcao
Home Page: https://yaqiangcao.github.io/cLoops/
3d-genome,Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
User: yaqiangcao
3d-genome,
Organization: zhanggroup-mitchemistry
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