Topic: hic Goto Github
Some thing interesting about hic
Some thing interesting about hic
hic,A few tools for converting contact maps to .hic format compatible with the 4D Genome Browser.
Organization: 4dgb
hic,Repo containing scripts for HiChIP data analysis
User: adityamahadevaniyer
hic,migrated from Gitlab
User: ashleyzhou972
hic,Snakemake workflow for processing Arima HIC data
Organization: carbonelab
hic,FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data
Organization: cellular-genomics
hic,TAD Calling using spectral clustering in R
User: cresswellkg
hic,Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
Organization: ctlab
Home Page: https://genome.ifmo.ru/hict
hic,3DGB is a workflow to build 3D models of genomes from HiC data
Organization: data-fun
hic,HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Organization: deeptools
Home Page: https://hicexplorer.readthedocs.org
hic,Github Repo for Hi-C and MC-3C analysis scripts for the Topo II Inhibition Manuscript
Organization: dekkerlab
hic,Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
Organization: dozmorovlab
Home Page: https://dozmorovlab.github.io/HiCcompare/
hic,HiC processing scripts used in the center.
Organization: epigen-ucsd
hic,Trabajo de Fin de Master. Caracterización estructural, composicional y funcional de los quejigares del Parque Natural de la Sierra de Huétor
User: estrellaconde
hic,HiC sunt dracones - or HiCDS in short - Your little helper for the HiC analysis
Organization: foerstner-lab
hic,Configurable Hi-C pipeline that is easy to use
User: gabrielstav
Home Page: https://github.com/Gabrielstav/HiEdge
hic,R package: GSE84920.parser: Parsers for the GSE84920 Hi-C Data Sets of Ramani et al. (2017)
User: henrikbengtsson
Home Page: https://github.com/HenrikBengtsson/ramani
hic,Non-Official Fork: Integrating Multi-Track Hi-C Data for Genome-Scale Reconstruction of 3D Chromatin Structure
User: henrikbengtsson
hic,R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
User: henrikbengtsson
Home Page: https://cran.r-project.org/package=TopDom
hic,R package: TopDomStudy
User: henrikbengtsson
Home Page: https://github.com/HenrikBengtsson/TopDomStudy
hic,Multi-scale analysis of local differences in chromatin architecture
User: hillarykoch
hic,Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow
Organization: insilicoconsulting
hic,Identification of enriched motif pairs from chromatin interaction data
User: jhammelman
Home Page: https://spatzie.mit.edu
hic,Extract Sequence from Genome According to Annotation File
User: junjunlab
Home Page: https://github.com/junjunlab/BioSeqUtils
hic,Irreproducible discovery rate for genomic interaction data
User: kkrismer
Home Page: https://idr2d.mit.edu
hic,Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Organization: kundajelab
hic,
User: lux563624348
Home Page: https://pypi.org/project/hichub/
hic,Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Organization: nf-core
Home Page: https://nf-co.re/hicar
hic,a Snakemake version of distiller - the Open2C Hi-C mapping workflow
Organization: open2c
hic,[Research Intern work] HiC Data Analysis Suite
User: orionpax00
Home Page: https://orionpax00.github.io/ChrVis
hic,Blazing fast toolkit to work with .hic and .cool files
Organization: paulsengroup
hic,Python bindings for hictk: read and write .cool and .hic files directly from Python
Organization: paulsengroup
hic,R bindings for hictk: read .cool and .hic files directly from R
Organization: paulsengroup
hic,High-performance stochastic modeling of DNA loop extrusion interactions
Organization: paulsengroup
hic,Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)
User: picani
Home Page: https://gite.lirmm.fr/pulicani/phyloHiC
hic,Hi-C Architect for Neural Networks
User: profh2so4
hic,Projects realized during Computational Genomics course.
User: pruswielki
hic,A Nextflow DSL2 pipeline for pretext generation in curation
Organization: sanger-tol
Home Page: https://pipelines.tol.sanger.ac.uk/curationpretext
hic,This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
Organization: sanger-tol
Home Page: https://pipelines.tol.sanger.ac.uk/genomenote
hic,Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
User: sebastian-gregoricchio
Home Page: https://sebastian-gregoricchio.github.io/snHiC/
hic,A GUI application for labeling HiC data with rectangles.
User: superjie13
hic,A python library to display HiC data on a circular strip and to integrate genomic data
Organization: tree-timc
Home Page: https://tree-timc.github.io/circhic/
hic,I'm sharing my automation of the 3D_DNA and SALSA Hi-C scaffolding pipelines.
User: viriatoii
hic,Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
Organization: wtsi-hpag
hic,A two-step model that combines neural network and ensemble learning to predict OCR–mediated interactions.
User: yin-shen
hic,Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the interaction of the OAS3 Epromoter with its target promoters OAS1 and OAS2, before and after IFN alpha stress stimulation and then to figure out the changes of the 3D chromatin organization upon this stress stimulation.
User: youssefayachii
hic, Tools for processing HIC data.
User: zhqu1148980644
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