open2c Goto Github PK
Name: Open Chromosome Collective
Type: Organization
Twitter: Open2C_team
Name: Open Chromosome Collective
Type: Organization
Twitter: Open2C_team
Genome assembly metadata
Genomic interval operations on Pandas DataFrames
https://open2c.github.io/bioframe-poster
A cool place to store your Hi-C
Cooler demo using a Jupyter notebook Binder
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
The tools for your .cool's
A modular Hi-C mapping pipeline
a Snakemake version of distiller - the Open2C Hi-C mapping workflow
Test data for distiller
Google Summer of Code - Open2C
Hi-C spectral analysis workflow
A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC. See https://github.com/ewels/MultiQC
Welcome to the Open Chromosome Collective!
A collection of notebooks and gists demonstrating novel applications of open2c ecosystem of tools
Read, write and analyse Hi-C pairs
Extract 3D contacts (.pairs) from sequencing alignments
CLI tools to process mapped Hi-C data
Chromosome polymer simulations and in silico capture experiments
snakemake pipeline for Hi-C post-processing
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.