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Xiaotao Wang's Projects

awesome-public-datasets icon awesome-public-datasets

A topic-centric list of high-quality open datasets in public domains. Propose NEW data ☛☛☛PR☛☛☛

caltads icon caltads

A hierarchical domain caller for Hi-C data based on a modified version of Directionality Index

cooler icon cooler

A cool place to store your Hi-C

domaincaller icon domaincaller

A Python implementation of the original DI domain caller

eaglec icon eaglec

A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps

gimmemotifs icon gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

gradesudoku icon gradesudoku

Python library for generating Sudoku puzzles of different grades

gseapy icon gseapy

Gene Set Enrichment Analysis in Python

hic_pipeline icon hic_pipeline

An easy-to-use Hi-C data processing software supporting distributed computation.

hiclift icon hiclift

A fast and efficient tool for converting chromatin interaction data between genome assemblies

hicpeaks icon hicpeaks

A Python implementation for BH-FDR and HiCCUPS

imbalanced-learn icon imbalanced-learn

Python module to perform under sampling and over sampling with various techniques.

minimap2 icon minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

neoloopfinder icon neoloopfinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

peakachu icon peakachu

Genome-wide contact analysis using sklearn

pomegranate icon pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

pyensembl icon pyensembl

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

python icon python

All Algorithms implemented in Python

smoove icon smoove

structural variant calling and genotyping with existing tools, but, smoothly.

speedseq icon speedseq

A flexible framework for rapid genome analysis and interpretation

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