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ampliconbiseq

R package for Amplicon bisulfite-sequencing

bavaria

Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets

bayesprism

A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

bimsbbioinfo.github.io

website for the platform

bioconda-recipes

Conda recipes for the bioconda channel.

bits

BITS: Binary Interval Search

casled

cas13 + LEDs

ccfdna_acss_manuscript

The repo for the manuscript "Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation"

circus

An R package for annotation of circular RNAs

collab_meyer_selbach_glut1

Reproduce bioinformatics analysis for the paper Meyer, K. et al., Cell, 2018.

collab_rrustemi_selbach_prisma

Data and scripts related to short linear motif analyses for the collaboration with Trendelina Rrustemi from Matthias Selbach's Lab

compgen

compgen2015material

compgen2018

teaching material for compgen2018 course

compgen2020

compgen2021

compgen2021capstone

crispr_dart

A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

cufflinks

Attempt to replace non-free locfit code with the free version from CRAN

deconvr

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

deep-seq-workflow

Deep Seq experiments backup workflow

docker-galaxyp

:whale: Galaxy Docker repository with tools for proteomics (GalaxyP flavour)

dorina

doRiNa - database of posttranscriptional regulatory elements

epicseg

Chromatin segmentation in R

epicseg_galaxy

Galaxy wrapper for EpiCSeg - a tool for conducting chromatin segmentation.

ewyler_sars-cov

fastqc

A quality control analysis tool for high throughput sequencing data

flairexplorer

flexynesis-benchmarks

Comprehensive continuous benchmarking of tools for multi-omics data integration

froehlich_uyar_et_al_2020