Topic: transposable-elements Goto Github
Some thing interesting about transposable-elements
Some thing interesting about transposable-elements
transposable-elements,Transposable Element Finder - Detection of active transposable elements from NGS data
User: akiomiyao
transposable-elements,Transposon Insertion Finder - Detection of new TE insertions in NGS data
User: akiomiyao
transposable-elements,Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
Organization: bodegalab
transposable-elements,A package to count reads mapping on transposable elements subfamilies, families and classes.
Organization: bodegalab
transposable-elements,A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis
Organization: boulardlab
Home Page: https://github.com/boulardlab/3t-seq
transposable-elements,RepeatMasker Trinity based Parse Script
User: clbutler
transposable-elements,dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
User: clemgoub
transposable-elements,Annotation helper tool for the manual curation of transposable element consensus sequences
User: clemgoub
Home Page: https://doi.org/10.1186/s13100-021-00259-7
transposable-elements,Genotyping of segregating mobile elements insertions
User: clemgoub
transposable-elements,High-precision TE Annotator
User: csu-kanghu
transposable-elements,TE Classifier Using CNN
User: csu-kanghu
Home Page: https://github.com/CSU-KangHu/NeuralTE
transposable-elements,Tn3 Transposon/Toxin Finder
User: danillo-alvarenga
transposable-elements,Composite Transposon Finder
User: danillo-alvarenga
transposable-elements,A pipeline for predicting and masking transposable elements in multiple genomes.
User: darcyabjones
transposable-elements,starfish: a modular toolkit for giant mobile element annotation
User: egluckthaler
transposable-elements,MCHelper: An automatic tool to curate transposable element libraries
Organization: gonzalezlab
transposable-elements,a GALAXY-based pipeline for bioinformatic in-depth exploration of small RNA-seq data
Organization: gred-clermont
transposable-elements,CLI tool for bioinformatic in-depth exploration of small RNA-seq data
Organization: gred-clermont
transposable-elements,SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
User: hyunhwan-jeong
transposable-elements,Useful python scripts for genomic analyses
User: jacopom28
transposable-elements,Interactive Visualization Browser for Transposable Elements (TEs) community
User: jamesc99
Home Page: https://repeatbrowser.org/
transposable-elements,characterization of TEs from low-coverage genomic sequence data
User: k8hertweck
transposable-elements,A pipeline to to determine the repeat content of genes and their neighboring regions.
User: lkremer
transposable-elements,Scripts I have written as a graduate research assistant
User: lydia-holley
transposable-elements,Evolutionary genomics of chromosomal inversions in Atlantic herring
User: mafaldasferreira
transposable-elements,Simultaneous analysis of genes and transposable elements (TEs) from 10X scRNAseq datasets derived from CD and NIBD samples using Alevin.
User: manu-1512
transposable-elements,Distribution of TEs and their relationship to genes in host genome
User: mariebvr
transposable-elements,Snakemake pipeline to analyze retrotransposable element 'omics data.
User: maxfieldk
transposable-elements,TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.
User: mptrsen
transposable-elements,Snakemake workflow for transposable element RNA-Seq using TEtranscripts
User: niekwit
transposable-elements,A pipeline to detect chimeric transcripts derived from genes and transposable elements.
User: oliveirads-hub
transposable-elements,Extensive de-novo TE Annotator
User: oushujun
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
transposable-elements,Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Organization: parklab
transposable-elements,Wrapper script to identify TEs and mask genome
User: plantdr430
transposable-elements,Determine the sequence type of specific transposable elements in bacterial isolates.
Organization: public-health-bioinformatics
transposable-elements,A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
User: rawalteam
transposable-elements,bs-ATLAS-seq analysis scripts
User: retrogenomics
transposable-elements,Supplementary to publication "DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows"
User: roblehmann
Home Page: https://academic.oup.com/gbe/article/13/10/evab228/6380143
transposable-elements,Nextflow workflow for automatic repeat detection, classification and masking
User: robsyme
transposable-elements,A tool for discovering transposable elements and describing patterns of genome evolution
User: sestaton
transposable-elements,A toolkit for annotation of transposable element families from unassembled sequence reads
User: sestaton
Home Page: http://sestaton.github.io/Transposome
transposable-elements,Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
User: sjteresi
transposable-elements,SLURM-ready bash scripts to run the complete REPET pipeline
Organization: stajichlab
transposable-elements,Find and classify transposable elements using convolutional neural networks.
User: tiago-minuzzi
transposable-elements,Build your own deep learning transposable elements classifier with ease.
User: tiago-minuzzi
transposable-elements,Earl Grey: A fully automated TE curation and annotation pipeline
User: tobybaril
transposable-elements,Singularity image for PASTEC (transposable elements classification tool).
User: tommasobarberis
transposable-elements,A simple bash pipeline for extension and edge polishing of transposable elements consensi.
User: tommasobarberis
transposable-elements,A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
Organization: urgi-anagen
Home Page: https://urgi.versailles.inra.fr/Tools/REPET
transposable-elements,code to analyse RepeatMasker output
User: valentinabop
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