Name: Shujun Ou
Type: User
Company: Ohio State University
Bio: Assistant Professor @ Ohio State, #Transposable elements, #LTR retrotransposon, #Plant genomics, #Population genomics
Twitter: sigmafacto
Location: Columbus, OH
Blog: https://www.ou-lab.org/
Shujun Ou's Projects
SINE annotation tool for plant genomes
Generate an interactive dot plot from mummer or minimap alignments
Drosophila transposable element canonical sequences
Extensive de-novo TE Annotator
A parallel wrapper for LTR_FINDER
An accessory script to run LTRharvest in parallel modified by @wild-joker.
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
The repository for codes developed to generated the Maize NC358 assemblies and analyses.
A repository to host scripts created for maize TE annotation protocols
A repo contains historical and updated MTEC libraries.
Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file
Plot coverage or percent of total sequence as a function of minimum read length
Study of TE evolution in a population of genomes
A collection of manually curated TE examplars in rice (Oryza sativa).
Toolkit for processing sequences in FASTA/Q formats
Nucleotide diversity estimation using population SNP data