Name: Robert Syme
Type: User
Company: Seqera Labs
Bio: Open data, open science, open and decentralised publishing. Data wrangling, molecular biology, genomics and bioinformatics. Research scientist. Novice human.
Twitter: robsyme
Location: Montréal, QC, Canada
Blog: http://robsyme.com
Robert Syme's Projects
A very quick and dirty project to help out a colleague
Genome Annotation for the Masses
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
Alethia peer to peer publishing platform
Anchor is a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.
A collection of playbooks used for managing machines
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Web player for terminal session recordings ⏩
ATAC-seq peak-calling, QC and differential analysis pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
A hashgraph implementation written in Go
not used anymore
Repo for student website
A library that allows you to pull ruby objects out of a Chado-schema database
A plugin that allows you to parse large blast XML output files lazily, reading only what you need.
Help for working with the output of the .delta files produced by nucmer and promer
Public web page for brohrer
https://gitlab.com/ezlab/busco
Module 2 materials for Informatics on High Throughput Sequencing Data
CBW HT-seq workshop module 5 on SV variants calling
Docker container for running CEGMA
MS/MS search engine.
A very quick and dirty sketch to quickly visualise large-scale genome comparisons in non-model organisms. Also might be handy for creating SVG drafts which can be cleaned up in Inkscape for publication.
COSMO: COrrection of Sample Mislabeling by Omics
Web content for the development containers specification.
DNAseq pipelines