public-health-bioinformatics Goto Github PK
Name: Public Health Bioinformatics
Type: Organization
Location: Vancouver, BC
Name: Public Health Bioinformatics
Type: Organization
Location: Vancouver, BC
Transforms fasta files of flu antigenic site amino acids into aggregated line lists, comparing antigenic maps to that of a reference sequence and collapsing and enumerating identical sequences.
Extracts antigenic amino acids from flu sequence, using a specific index array (i.e. for H3, H1 etc.).
This is a Galaxy tool to compare 24 column tabular blast search results to see differences. Used where same search is conducted against two versions of a database to determine how the database has changed and whether there are any issues with the database.
A Galaxy tool that converts an NCBI BLAST XML format search result into 12, 24, 26 or custom column tabular and HTML reports.
Renames definition lines in fasta files.
Python scripts to assign clade designations to influenza amino acid fasta files.
An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.
A question and answer web form system for exploring the research questions and datasets pertinent to an emerging infectious disease outbreak.
:syringe: :bar_chart: Flu Classification Suite
Galaxy tool training materials being developed for in-house workshops.
Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
Human RNA virus genotyping
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
Detect the presence of specific resistance genes in a sample using the IRIDA system
Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
Call SNPs and indels between a reference genome and your sequence data
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
Determine the sequence type of specific transposable elements in bacterial isolates.
command line versioning tool for large key-value text files
An ontology that contains various agency category schemes that Lexmapr can use to report matched terms by.
Transforms fasta files of flu antigenic site amino acids into line lists, comparing antigenic maps to that of a reference sequence.
This is a spreadsheet application to facilitate tracking, reporting, exchange, and submission of metadata for various projects involving enteric bacteria surveillance. This user-friendly entry form contains fields pertaining to isolate collection and sequencing, isolate typing, geographical information, sample source, clinical details and environmental descriptors.
Script to handle uploading minion fast5 files to a server for further processing
OBO Foundry Ontology Registry
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.