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Hyun-Hwan Jeong's Projects

algospot icon algospot

algospot.com, forum + online judge for Korean programming contestants

cb2 icon cb2

CB2 is an R package which provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.

cb2-experiments icon cb2-experiments

CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.

conflr icon conflr

Post R Markdown documents to Confluence

drivaer icon drivaer

DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores

fastq-js icon fastq-js

A bug fix version of http://gregoryzynda.com/fastqa-js.html

gr icon gr

Genome Research template for LaTeX

hihmm icon hihmm

hiHMM: Bayesian non-parametric joint inference of chromatin state maps

macs icon macs

MACS -- Model-based Analysis of ChIP-Seq

mina icon mina

Integrative network analysis for gene-gene interactions associated with clinical outcome across multiple genomic profiles

ml-youtube-courses icon ml-youtube-courses

A repository to index and organize the latest machine learning courses found on YouTube.

rsa icon rsa

a package version of carrier.gnf.org/publications/RSA/

salmonte icon salmonte

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

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