Topic: synthetic-biology Goto Github
Some thing interesting about synthetic-biology
Some thing interesting about synthetic-biology
synthetic-biology,Computational synthetic biology: Predicting DNA edits for bioengineering
Organization: 20n
Home Page: http://20n.com
synthetic-biology,Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Organization: amyris
synthetic-biology,Software for predicting translation initiation rates in bacteria
Organization: barricklab
synthetic-biology,Open source biolab
Organization: basedlabs
synthetic-biology,A Go package for engineering organisms.
Organization: bebop
Home Page: https://pkg.go.dev/github.com/bebop/poly
synthetic-biology,Reinforcement Learning based bioretrosynthesis tool
Organization: brsynth
synthetic-biology,RetroPath2.0 to pathways
Organization: brsynth
synthetic-biology,An IDE for synthetic biology
User: camelcasecam
synthetic-biology,Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
User: christophreich1996
Home Page: https://arxiv.org/pdf/2011.09763
synthetic-biology,Official and maintained implementation of the paper "Multi-StyleGAN: Towards Image-Based Simulation of Time-Lapse Live-Cell Microscopy" [MICCAI 2021].
User: christophreich1996
Home Page: https://arxiv.org/abs/2106.08285
synthetic-biology,Genetic circuit design automation
Organization: cidarlab
Home Page: http://www.cellocad.org/
synthetic-biology,Cello v2 is the continuation of the Cello genetic circuit design software.
Organization: cidarlab
synthetic-biology,Full stack application for creating and storing combinatorial genetic design spaces.
Organization: cidarlab
synthetic-biology,🎺 Plot DNA digestion band patterns with Python
Organization: edinburgh-genome-foundry
Home Page: http://edinburgh-genome-foundry.github.io/BandWagon/
synthetic-biology,💫 Computer-aided DNA assembly validation and identification from restriction digests.
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/BandWitch/
synthetic-biology,🎨 Python library to plot multi-part genetic constructs
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/Caravagene/
synthetic-biology,Read DNA sequences from colourful Microsoft Word documents
Organization: edinburgh-genome-foundry
synthetic-biology,🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
Organization: edinburgh-genome-foundry
Home Page: http://cuba.genomefoundry.org
synthetic-biology,:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/DnaCauldron/
synthetic-biology,:pencil2: A versatile DNA sequence optimizer
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/DnaChisel/
synthetic-biology,:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/
synthetic-biology,A route planner for DNA assembly
Organization: edinburgh-genome-foundry
Home Page: https://dnaweaver.genomefoundry.org
synthetic-biology,:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/Geneblocks/
synthetic-biology,Batch domestication of genetic parts with Python
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/genedom/
synthetic-biology,:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/genome_collector/
synthetic-biology,:link: Short overhangs design for DNA assembly
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/GoldenHinges/
synthetic-biology,🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/Plateo/
synthetic-biology,:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/Primavera/
synthetic-biology,:curly_loop: Draw genetic elements with HTML & CSS
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/SBOL-Visual-CSS/
synthetic-biology,:space_invader: Generate identicons for DNA sequences with Python
Organization: edinburgh-genome-foundry
synthetic-biology,:paw_prints: DNA overhang misannealing data for Python
Organization: edinburgh-genome-foundry
Home Page: https://cuba.genomefoundry.org/view-overhangs-crosstalk
synthetic-biology,TISIGNER: Unleash the power of synthetic biology
Organization: gardner-binflab
Home Page: https://tisigner.com
synthetic-biology,Accurate segmentation of bacterial microscope images using synthetically generated image data.
User: georgeoshardo
Home Page: https://doi.org/10.1186/s12915-022-01453-6
synthetic-biology,Library for combinatorially specifying, constraining, and exploring genetic design spaces.
Organization: hicsail
Home Page: http://constellationcad.org
synthetic-biology,teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
User: hiyama341
synthetic-biology,A Python molecular biology CAD tool with a dead-simple user interface
User: jvrana
Home Page: https://jvrana.github.io/DASi-DNA-Design/
synthetic-biology,Computer-Aided Process Planner (CAPP) for Synthetic Biology Research
User: jvrana
synthetic-biology,A Go package for designing DNA.
User: koeng101
synthetic-biology,a JavaScript DNA, RNA, and protein sequence viewer
Organization: lattice-automation
Home Page: https://tools.latticeautomation.com/seqviz
synthetic-biology,Learn how to create with biology.
Organization: madewithbio
Home Page: https://madewithbio.com
synthetic-biology,Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
User: mauriceling
Home Page: https://github.com/mauriceling/advancesyntoolkit/wiki
synthetic-biology,BGC Detection and Classification Using Deep Learning
Organization: merck
Home Page: https://doi.org/10.1093/nar/gkz654
synthetic-biology,Data-driven design of context-specific regulatory elements
User: meuleman
synthetic-biology,Book Website: Dynamic System Modelling & Analysis with MATLAB & Pythobn
User: myjr52
synthetic-biology,A project to create synthetic vascular networks utilising L-Systems.
User: psweens
synthetic-biology,Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic
User: robertosolari
synthetic-biology,For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
Organization: seek4science
Home Page: http://www.seek4science.org
synthetic-biology,Web application enabling users and software to browse, upload, and share synthetic biology designs
Organization: synbiohub
Home Page: https://wiki.synbiohub.org
synthetic-biology,The resources I always recommend to new synthetic biologists.
User: timothystiles
synthetic-biology,Interpretable genotype-phenotype landscape modeling
Organization: usnistgov
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