Topic: microscopy Goto Github
Some thing interesting about microscopy
Some thing interesting about microscopy
microscopy,Image-processing software for cryo-electron microscopy
Organization: 3dem
Home Page: https://relion.readthedocs.io/en/latest/
microscopy,Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
User: aangelopoulos
microscopy,Library for producing and processing on the Adaptive Particle Representation (APR).
Organization: adaptiveparticles
microscopy,Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Organization: allencellmodeling
Home Page: https://allencellmodeling.github.io/aicsimageio
microscopy,Axon/Myelin segmentation using Deep Learning
Organization: axondeepseg
Home Page: https://axondeepseg.rtfd.io/
microscopy,Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
Organization: biomedical-imaging-group
Home Page: http://bigwww.epfl.ch/deconvolution/deconvolutionlab2/
microscopy,Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Organization: bmirds
Home Page: https://www.nature.com/articles/s41598-019-40041-7
microscopy,A lightweight python module to interact with atlases for systems neuroscience
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
microscopy,Automated 3D brain registration with support for multiple species and atlases.
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/brainreg/index.html
microscopy,Automated 3D cell detection in very large images
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/cellfinder/index.html
microscopy,GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Organization: clesperanto
Home Page: http://clesperanto.net
microscopy,Methods for Image-Based Cell Profiling
Organization: cytomining
Home Page: https://cytomining.github.io/cytominer/
microscopy,Python package for processing image-based profiling data
Organization: cytomining
Home Page: https://pycytominer.readthedocs.io
microscopy,Tools for computational pathology
Organization: dana-farber-aios
Home Page: https://pathml.org
microscopy,TF Implementation of Multiple Instance Learning FCN.
User: dancsalo
microscopy,python functions for simulating optical transfer functions
User: david-hoffman
microscopy,Scalable Optical Flow-based Image Montaging and Alignment
Organization: google-research
microscopy,A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
User: hallvaaw
microscopy,Manual, source-code and binaries for the NanoJ-Fluidics project
Organization: henriqueslab
microscopy,ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Organization: imswitch
Home Page: https://imswitch.readthedocs.io/
microscopy,Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
User: jr0th
microscopy,A collection of tools for painting super-resolution images
Organization: jungmannlab
Home Page: https://picassosr.readthedocs.io/en/latest/?badge=latest
microscopy,Experimental tech-demo for PhD thesis in Scientific Markdown; official:
User: katrinleinweber
Home Page: http://kops.uni-konstanz.de/handle/123456789/34342
microscopy,Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
Organization: labsyspharm
Home Page: https://github.com/labsyspharm/minerva-story/wiki
microscopy,Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Organization: nicalab
Home Page: https://www.nature.com/articles/s41592-023-02005-8
microscopy,Loading and handling microscopy data in blender
User: oanegros
microscopy,Encoder-Decoder Cell and Nuclei segmentation models
User: okunator
Home Page: https://github.com/okunator/cellseg_models.pytorch
microscopy,Pure Python library for reading NIS Elements ND2 images and metadata
Organization: open-science-tools
Home Page: http://www.lighthacking.nl/nd2reader
microscopy,Open and Affordable Quantitative Imaging Platform
Organization: planktoscope
Home Page: https://www.planktoscope.org
microscopy,Optimization framework developed in Pytorch, allowing calibration, and joint optimization of optics and deep learning models.
User: pvjosue
microscopy,Deep and Machine Learning for Microscopy
Organization: pycroscopy
Home Page: https://atomai.readthedocs.io/
microscopy,Scientific analysis of nanoscale materials imaging data
Organization: pycroscopy
Home Page: https://pycroscopy.github.io/pycroscopy/about.html
microscopy,GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
Organization: pymmcore-plus
Home Page: https://pymmcore-plus.github.io/napari-micromanager/
microscopy,cuCIM - RAPIDS GPU-accelerated image processing library
Organization: rapidsai
Home Page: https://docs.rapids.ai/api/cucim/stable/
microscopy,A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.
User: roflmaostc
Home Page: https://roflmaostc.github.io/DeconvOptim.jl/stable/
microscopy,Self-supervised models for encoding protein localization patterns from microscopy images
Organization: royerlab
microscopy,Visualize, share and annotate your large 3D images online
Organization: scalableminds
Home Page: https://webknossos.org
microscopy,Read and write Neuroglancer datasets programmatically.
Organization: seung-lab
Home Page: https://twitter.com/thundercloudvol
microscopy,CellViT: Vision Transformers for Precise Cell Segmentation and Classification
Organization: tio-ikim
Home Page: https://doi.org/10.1016/j.media.2024.103143
microscopy,The Fluorescent Protein Database
User: tlambert03
Home Page: https://www.fpbase.org
microscopy,Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
User: tlambert03
Home Page: https://tlambert03.github.io/nd2
microscopy,native Python dataclasses for the OME data model
User: tlambert03
Home Page: https://ome-types.readthedocs.io/en/latest/
microscopy,This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
Organization: turagalab
microscopy,Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
User: weisongzhao
Home Page: https://weisongzhao.github.io/Sparse-SIM/
microscopy,Electron/X-ray ptychography and tomography/laminography
User: yijiang1
Home Page: https://chat.openai.com/g/g-YKQKluCy9-foldslicegpt
microscopy,Open Source Cross-Platform C++ library to read CZI image files
Organization: zeiss-microscopy
microscopy,Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Organization: zeiss-microscopy
microscopy,Gaussian processes and Bayesian optimization for images and hyperspectral data
User: ziatdinovmax
microscopy,PyTorch Connectomics: segmentation toolbox for EM connectomics
User: zudi-lin
Home Page: http://connectomics.readthedocs.io/
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