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abiss

Affinity based image segmentation system

agglomeration

Enlarging your supervoxels

airflow

Apache Airflow

alembic

A set of tools for elastic image registration in Julia

analysisdatalink

annotationpipelineoverview

artificery

augmentor

Data augmentation for training 3D convolutional nets

bigarrays.jl

Storing and accessing large Julia array locally or in cloud storage without server.

bossarrays.jl

Julia interface to BOSS for large scale image cutout and chunk saving.

cavepipelines

instructions for creating chunkedgraph, initial meshing, l2cache etc

cell-picker

Seed new Eyewire cells by given coordinates.

chunk_iterator

Iterating through chunks in an octree

chunked-graph

Chunked graph structure used for human proof-reading

chunkflow

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

chunkflow.jl

Distributed pipeline inside and beyond the cloud

cloud-files

Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

cloud-volume

Read and write Neuroglancer datasets programmatically.

cloudvolume.jl

Read and Write Neuroglancer Precomputed using a Julia wrapper for Python's cloud-volume

compressedseg

compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.

compresso

Compresso: Efficient Compression of Segmentation Data For Connectomics

connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

contact-points

Find contact points in a 3D Volume.

contactanalysis.jl

Simple count of edges shared by neighboring voxels between segment pairs

coregistration

corgie

Command line tool for registration of very large 3D volumes.

corgie_deprecated

corgie_release_deprecated

crackle

3D dense segmentation compression codec based on crack codes.

cross-section

Tools for computing properties of cross sections of 3D voxelized images.