Topic: bioimage-analysis Goto Github
Some thing interesting about bioimage-analysis
Some thing interesting about bioimage-analysis
bioimage-analysis,Tool for segmentation in bioimaging
Organization: 4dnucleome
Home Page: https://partseg.github.io/
bioimage-analysis,Package for performing automated bio-image analysis tasks.
User: alphonsg
bioimage-analysis,Encyclopedia of helper scripts to make 3D and 4D images processing easy.
User: antoineruzette
bioimage-analysis,C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
User: arttumiettinen
bioimage-analysis,Quantifying the dynamics of long-range cell-cell mechanical communication paper code
User: assafna
Home Page: https://www.biorxiv.org/content/10.1101/2020.07.30.223149v1
bioimage-analysis,Python libraries for loading, running and packaging bioimage.io models
Organization: bioimage-io
Home Page: https://bioimage-io.github.io/core-bioimage-io-python/
bioimage-analysis,Some CellProfiler plugins.
Organization: biomicrodev
bioimage-analysis,Track single cells and profile the cell cycle with PCNA fluorescence images
User: chan-labsite
bioimage-analysis,Visualise pcnaDeep single-cell tracking data
User: chan-labsite
bioimage-analysis,SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Organization: ciccalab
Home Page: https://github.com/ciccalab/SIMPLI/wiki
bioimage-analysis,GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Organization: clesperanto
Home Page: http://clesperanto.net
bioimage-analysis,U-Net implementation in PyTorch for segmentation of bio-images
User: danihae
bioimage-analysis,CaMOS, a GUI for analysis of multimodal neuroscience datasets.
User: danilexn
bioimage-analysis,Main repository gathering all content of the EMBO-DL4MIA 2024 course.
Organization: dl4mia
bioimage-analysis,A Jupyter notebook to identify collective cell signalling in raw microscopy images
User: dmattek
bioimage-analysis,Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023
Organization: euro-bioimaging
bioimage-analysis,Image data and Python scripts for the course on Bioimage analysis with Napari
User: fabriziomusacchio
Home Page: https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/
bioimage-analysis,
Organization: fpbioimage
bioimage-analysis,Benchmarking Large Language Models for Bio-Image Analysis Code Generation
User: haesleinhuepf
bioimage-analysis,A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
User: hallvaaw
bioimage-analysis,imageC / EVAnalyzer2 - High throughput biological image processor
User: joda01
Home Page: https://imagec.org
bioimage-analysis,Code repository for project focusing on blood cell detection and diagnostic prediction from peripheral blood slides
User: josegcpa
bioimage-analysis,Guides and code for 3D nuclear instance segmentation
Organization: kreshuklab
bioimage-analysis, A tool for cell instance aware segmentation in densely packed 3D volumetric images
Organization: kreshuklab
Home Page: https://kreshuklab.github.io/plant-seg/
bioimage-analysis,Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
User: leoguignard
bioimage-analysis,Evaluation of label free cell and nuclei segmentation
User: lstrgar
bioimage-analysis,A vision-language foundation model for computational pathology - Nature Medicine
Organization: mahmoodlab
bioimage-analysis,Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Organization: mahmoodlab
bioimage-analysis,AI-based pathology predicts origins for cancers of unknown primary - Nature
Organization: mahmoodlab
Home Page: http://toad.mahmoodlab.org
bioimage-analysis,Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Organization: mastodon-sc
bioimage-analysis,A deep-learning pipeline for segmentation of ambiguous microscopic images.
User: matjesg
Home Page: https://matjesg.github.io/deepflash2/
bioimage-analysis,computer vision models for single-cell phenotyping
Organization: mehta-lab
Home Page: https://pypi.org/project/viscy/
bioimage-analysis,Automated batch processing for tissue microscopy image data
Organization: mercaderlabanatomy
bioimage-analysis,PhD dissertation: Methods for Automated Neuron Image Analysis candidate: Miroslav Radojevic Publisher: Erasmus University ISBN 978-94-6361-204-3
User: miroslavradojevic
Home Page: https://repub.eur.nl/pub/116493
bioimage-analysis,
Organization: montpellierressourcesimagerie
bioimage-analysis,ImageJ macros and scripts written at the imaging facility MRI
Organization: montpellierressourcesimagerie
bioimage-analysis,MRI ImageJ related python (jython) module.
Organization: montpellierressourcesimagerie
bioimage-analysis,Connect Napari with FIJI/ImageJ
Organization: montpellierressourcesimagerie
bioimage-analysis,Fiji plugin for object(s) detection using template(s) matching
Organization: multi-template-matching
Home Page: https://multi-template-matching.github.io/Multi-Template-Matching/
bioimage-analysis,Collection of useful (to me) python scripts for interacting with napari
User: psobolewskiphd
bioimage-analysis,QuPath - Bioimage analysis & digital pathology
Organization: qupath
Home Page: https://qupath.github.io
bioimage-analysis,This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
Organization: rms-daim
bioimage-analysis,MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
Organization: sanderslab
bioimage-analysis,Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
Organization: scalablecytometryimageprocessing
Home Page: https://scalable-cytometry-image-processing.readthedocs.io/en/latest/
bioimage-analysis,Source code and workflow protocols for SOCR 3D Cell Morphometry Project
Organization: socr
Home Page: http://www.socr.umich.edu/projects/3d-cell-morphometry
bioimage-analysis,StarDist - Object Detection with Star-convex Shapes
Organization: stardist
bioimage-analysis,Extraction and tracking of dynamic biopolymer networks.
User: tix209
Home Page: https://www.lehigh.edu/~div206/tsoax/
bioimage-analysis,Fast reconstruction of spatial networks from bioimages.
Organization: verapancaldilab
bioimage-analysis,Create a nice exploded visualization of segmented cells in a tissue.
User: whoisjack
bioimage-analysis,A Matlab pipeline for spatiotemporal quantification of monolayer cell migration. The repository includes Matlab source code. This repository is part of the book series "Neubias Bioimage Analysis". The analysis pipeline includes segmentation, velocity measurements, kymographs and multi-dimensional representations and PCA of wound healing assays.
Organization: zaritskylab
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