miroslavradojevic Goto Github PK

advantra

Advanced algorithms for neuron tracing - legacy code

agv_motion

Package for motion operations of the Scout 2.0 mobile base

airport-assistant

Airport robot assistant

annot

ImageJ plugins for annotating and exporting neuron tree critical points or neuron tree patches in microscopy images

bigneuron

Automated neuron reconstruction algorithms - entries for the BigNeuron project. It's a set of methods - implemented as plugins for vaa3d platform - that were gradually developed for the project. Repository keeps different versions in each directory

bridge_isaac_ros

Convert and send messages from Isaac SDK to ROS

clust

Simple clustering

complex-yolov4

The PyTorch Implementation based on YOLOv4 of the paper: "Complex-YOLO: Real-time 3D Object Detection on Point Clouds"

cpbd

C++ implementation of the CPBD sharpness metric

cpp-snippets

c++ code snippets

drawings

Vector drawings

ij-snippets

Collection of ImageJ plugins and snippets

loam

Zhang, J., & Singh, S. (2014, July). LOAM: Lidar Odometry and Mapping in Real-time. In Robotics: Science and Systems (Vol. 2, No. 9).

miroslavradojevic.github.io

Personal website

misc

Miscellaneous plugins and java stuff, mostly some tricks and useful pieces of Java code or ImageJ plugins.

mscthesis

Underwater Vehicle Localisation using Extended Kalman Filter

ndist

Java implementation of spatial distance measures between two neuron reconstructions. Calculates average spatial distance (SD), substantial spatial distance (SSD) and percentage of nodes with substantial spatial distance (%SSD) between two SWC neuron reconstruction files.

npinpoint

Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons

phd

Automated neuron tracing using probability hypothesis density filtering

phdthesis

PhD dissertation: Methods for Automated Neuron Image Analysis candidate: Miroslav Radojevic Publisher: Erasmus University ISBN 978-94-6361-204-3

pnr

Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images Using Sequential Monte Carlo Estimation

python-snippets

Python snippets and small programs

r-snippets

Scripts and snippets in R

ros-snippets

vess

Tubularity measure used in preparatory stages of the neuron tracing

vpoints

Vanishing point detection - basic rudimentary approach