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imageC / EVAnalyzer2 - High throughput biological image processor

License: GNU Affero General Public License v3.0

CMake 0.65% Dockerfile 0.15% Shell 0.36% Batchfile 0.14% C++ 92.19% JavaScript 0.04% PowerShell 0.13% Java 2.08% C 4.26%

biology image-processing science bioimage-analysis bioimage-informatics cell-segmentation opencv evanalyzer

imagec's Introduction

👋 Hi, I’m @joda01

imagec's People

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xinsuinizhuan

imagec's Issues

fix: win: Overlapping dropbox in panel edit

fix: win: No shadow in dialogs

feat: Preview for voronoi channel

fix: Heatmap for image does not create heatmap based on measurement settings

feat: Add image info dialog

A dialog should be implemented which displays infos to the actual selected image

Frame count (z-stack)
Channel count (nr. of channels)
Size
Type (16 bit)
Magnification
Channel Infos
- Name
- Emission wave length
- Excitation wave length
- Observation method type (FL, BR, ...)
- Exposure time

feat: Allow to open and store analysis settings

feat: Improve intersection calculation

Make it faster
Also log intensity of both channels
Allow to configure if one spot can intersect with more than on other

feat: Create detailed report of results

feat: Support for pyramid scaled images

fix: AI based detection not working under windows

Because of an MSYS bug in compiling opencv ONNX models cannot be loaded under imageC under windows.

(see msys2/MINGW-packages#19677)

Please use the Linux variant until this bug has been fixed.

feat: Allow regex without well cols and rows

feat: Implement natural sort for images

In reporting the images are sorted alphabetic. Make this sort natural:

_1
_2
_3
_10

instead of

_1
_10
_2
_3

feat: Cross compile for MAC OS

feat: Add spot detection

fix: Default screen size too big

feat: Stable cross compile without msys2 rolling releass

feat: Draw teraspecks in control image

feat: Create summary report of results

feat: Allow multiple thresholds for classification

It should be possible to set more than one threshold and allow to classify the found objects based on this thresholds.

feat: Implement auto updatet

feat: Extened preview with original image comparision

Both images, the original and the preview should be shown side by side and synced in scrolling and zoom, allowing the user to compare both picutres.