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pymol-color-alphafold's Introduction

This is a pymol extension to color structures from the AlphaFold Protein Structure Database by pLDDT.

  1. Load extension into pymol. In the pymol command prompt:
run https://raw.githubusercontent.com/cbalbin-bio/pymol-color-alphafold/master/coloraf.py

Step 1 Screenshot

  1. Invoke the extension in the pymol command prompt as so:
coloraf model_name

Step 2 Screenshot

pymol-color-alphafold's People

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pymol-color-alphafold's Issues

Exact colours

A very silly comment, but as this repo comes up top on searches, I though I best mention that the colours as shown on alphafold are not quite basic swatch colours.
The blue colour is #0053D6 (pLDDT ≥ 90)
The cyan colour is #65CBF3 (90>pLDDT≥70)
The yellow colour is #FFDB13 (70>pLDDT≥50)
The orange colour is #FF7D45, (pLDDT<50)
In PyMol commands

color 0xFF7D45, *
color 0xFFDB13, b >= 50
color 0x65CBF3, b >= 70
color 0x0053D6, b >= 90

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