ainaadekunle Goto Github PK

ainaadekunle.github.io

The website of Aina Adekunle

alphafold

Open source code for AlphaFold.

applied-ml

📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.

backbone-linkage-of-cyclic-peptides

bash

Run bash commands from python

betahelixdesign

Program for remodeling and design of tau beta-helix protein scaffold

blog

Repository for my blog on Data Insight @ datainsightonline.com

colabfold

Making Protein folding accessible to all via Google Colab!

deeplearninglifesciences

Example code from the book "Deep Learning for the Life Sciences"

dlwithtf

TensorFlow for Deep Learning Book

eslameklot.github.io

genie2

Protein structure diffusion model for unconditional protein generation and motif scaffolding

gmx_makecyclictop

This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology file

igfold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

learndatascience

Open Content for self-directed learning in data science

mbar_pmf

A script that uses pyMBAR to calculate potential of mean force for a set of umbrella sampling data

ml-road

Machine Learning Resources, Practice and Research

ml-surveys

📋 Survey papers summarizing advances in deep learning, NLP, CV, graphs, reinforcement learning, recommendations, graphs, etc.

openawsem

An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

openmm-md

Lee-Ping's general purpose script for running OpenMM molecular dynamics simulations

papers_for_protein_design_using_dl

List of papers about Proteins Design using Deep Learning

planets

SWC Workshop

protein-design-tutorials

Tutorials, cheat sheets, and other resources for computational methods for protein design.

protein-indelmaker

PyRosetta based package to make PDB files for specified mutations, insertions and deletions

prothon

A Python package for efficient comparison of protein ensembles

publication-on-multisequence-algorithm

py3dmol

py4e

Web site for www.py4e.com and source to the Python 3.0 textbook

pymbar

Python implementation of the multistate Bennett acceptance ratio (MBAR)