Topic: immunology Goto Github
Some thing interesting about immunology
Some thing interesting about immunology
immunology,
User: andrewrech
immunology,📝 [Tutorial] RepSeq data mining basics in R
Organization: antigenomics
immunology,🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
Organization: antigenomics
Home Page: https://vdjdb.cdr3.net
immunology,⚙️ A lightweight immune repertoire browser
Organization: antigenomics
Home Page: https://vdjviz.cdr3.net
immunology,ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
User: arosenfeld
Home Page: http://immunedb.com
immunology,Single-Cell Immunoglobulin Repertoire Toolkit
Organization: b-cell-immunology
immunology,R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
Organization: baderlab
immunology,Immunology Informatics - Big Data Analysis in Immunology - Tutorials
User: burkesquires
immunology,A data-centric flow/mass cytometry automated analysis framework
User: burtonrj
Home Page: https://cytopy.readthedocs.io/en/latest/
immunology,An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
Organization: cri-iatlas
Home Page: https://www.cri-iatlas.org
immunology,AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation
User: ctboughter
Home Page: https://aims-doc.readthedocs.io/en/latest/
immunology,Data portal and API for Center for Viral Systems Biology (CViSB) data
Organization: cvisb
Home Page: https://data.cvisb.org/home
immunology,Python package and command line tool for epitope prediction
User: dmnfarrell
immunology,A collaborative review of the emerging COVID-19 literature. Join the chat here:
Organization: greenelab
Home Page: https://gitter.im/covid19-review/community
immunology,[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Organization: imminfo
Home Page: https://immunarch.com/
immunology,Incredible Deep Learning in immunooncology with Pytorch - workshop at AIRR Community Meeting IV
Organization: immunomind
immunology,🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Organization: immunomind
Home Page: https://immunarch.com
immunology,Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
User: jamieheather
Home Page: https://jamieheather.github.io/stitchr/
immunology,simpler single cell RNAseq data clustering
User: japrin
immunology,Huge-scale, high-performance flow cytometry clustering in Julia
Organization: lcsb-biocore
Home Page: http://git.io/GigaSOM.jl
immunology,WES HLA Typing based on multiple alternative tools
User: lkuchenb
immunology,The Atlas of Immunoglobulin Repertoires (TheAIR)
Organization: mangul-lab-usc
immunology,Code for Celia and Nils' immune aging project.
Organization: marionilab
immunology,A Bayesian Phylo-HMM for B cell receptor sequence analysis
Organization: matsengrp
Home Page: http://matsengrp.github.io/linearham
immunology,Python SDK for Immune Epitope Database (IEDB) Analysis Tools API
User: mattfemia
immunology,A RepSeq processing swiss-knife
User: mikessh
Home Page: http://migec.readthedocs.io/en/latest/index.html
immunology,HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
User: mikessh
immunology,Post-analysis of immune repertoire sequencing data
User: mikessh
Home Page: vdjtools-doc.readthedocs.io
immunology,MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Organization: milaboratory
Home Page: https://mixcr.com
immunology,LZ76 Graphs and Applications in Immunology
User: mutejester
immunology,Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022
Organization: nec-research
Home Page: https://www.frontiersin.org/articles/10.3389/fimmu.2022.1014256/
immunology,Precision HLA typing from next-generation sequencing data
Organization: nf-core
Home Page: https://nf-co.re/hlatyping
immunology,Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2021)
Organization: paccmann
immunology,An HLA star-calling tool for PacBio HiFi data types
Organization: pacificbiosciences
immunology,Easy-to-use Directed Automated Filtering and Identification of cell populations in single cell data
User: pedromilanezalmeida
immunology,IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
User: qmarcou
Home Page: https://qmarcou.github.io/IGoR/
immunology,An R Interface to the ImmuneSpace database portal
Organization: rglab
Home Page: https://rglab.github.io/ImmuneSpaceR/
immunology,An R package to analyze single-cell V(D)J data
Organization: rnabioco
Home Page: https://rnabioco.github.io/djvdj
immunology,Automate IMGT V-QUEST usage on imgt.org
Organization: shawhahnlab
immunology,Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
User: sidhomj
Home Page: https://sidhomj.github.io/DeepTCR/
immunology,📚 Tools and databases for analyzing HLA and VDJ genes.
User: slowkow
immunology,🐶 hlabud: HLA genotype analysis in R
User: slowkow
Home Page: https://slowkow.github.io/hlabud/
immunology,Comparison of gene usage in immune repertoires under different biological conditions
User: snaketron
immunology,ML based prediction of immunogenic neoantigens for immunotherapy
Organization: svai
immunology,Comparison of Adaptive Immune Receptor Repertoires
Organization: uio-bmi
immunology,A Python library for reading and writing Flow Cytometry Standard (FCS) files
User: whitews
Home Page: https://flowio.readthedocs.io
immunology,A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
User: whitews
Home Page: https://flowkit.readthedocs.io
immunology,Standardise TR/MH data
User: yutanagano
Home Page: https://tidytcells.readthedocs.io
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