Topic: tcr-repertoire Goto Github
Some thing interesting about tcr-repertoire
Some thing interesting about tcr-repertoire
tcr-repertoire,Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)
Organization: abcwcm
tcr-repertoire,Scripts used in the manuscript titled "Autoimmunity to hypocretin and molecular mimicry to flu in Type 1 narcolepsy"
User: adiamb
tcr-repertoire,TCR clonotype analysis using mixcr and immunarch.
User: bennicolet
tcr-repertoire,Code for HRDetect, image analysis, TCR - seq from HGSOC samples
User: dkruttika
tcr-repertoire,Analysis functions for deep sequenced immune repertoire (Repseq) datasets in R
User: dyohanne
tcr-repertoire,Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.
Organization: fanzhanglab
Home Page: https://github.com/fanzhanglab/TteK
tcr-repertoire,An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Organization: guobioinfolab
Home Page: http://bioinfo.life.hust.edu.cn/CATT/
tcr-repertoire,A database of T-cell receptor sequences
Organization: guobioinfolab
tcr-repertoire,R package. Main goals are to fit models to the clone size distribution of the TCR repertoire, and to perform model-based comparative analysis of samples.
User: hillarykoch
tcr-repertoire,[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Organization: imminfo
Home Page: https://immunarch.com/
tcr-repertoire,🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Organization: immunomind
Home Page: https://immunarch.com
tcr-repertoire,Slides for presentations by ImmunoMind team
Organization: immunomind
tcr-repertoire,📑 A library of example code -aka cheatsheets- for tools I use or analyses I carry out pretty often. This repo doubles as an easy way to find the code I need without going through all my scripts.
User: ledakatopodi
tcr-repertoire,catELMo: Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions
Organization: lee-cbg
tcr-repertoire,simplified cellranger for long-read data
User: mehdiborji
tcr-repertoire,analysis of antibody diversity, .wdl wrapper workflow
Organization: oicr-gsi
tcr-repertoire,TCRscape - a tool for simultaneous multimodal gene expression and clonotype analysis of single T-cells profiled via the BD Rhapsody system.
User: perik-zavodskii
tcr-repertoire,Multimodal immunogenomic biomarker analysis of tumours from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab
Organization: pughlab
tcr-repertoire,Dynamics of peripheral T-cell repertoire in pediatric cancer patients over the course of chemoradiation
Organization: pughlab
tcr-repertoire,An example of immunopipe
User: pwwang
tcr-repertoire,Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
User: sidhomj
Home Page: https://sidhomj.github.io/DeepTCR/
tcr-repertoire,Comparison of gene usage in immune repertoires under different biological conditions
User: snaketron
tcr-repertoire,Deep unsupervised learning methods for the identification and characterization of TCR specificity to Sars-Cov-2
User: yanismiraoui
Home Page: https://m4r-dash.yanismiraoui.repl.co/
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