antigenomics Goto Github PK
Name: AntigenOmics
Type: Organization
Bio: Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and source code for related studies.
Twitter: antigenomics
Location: Czech Republic
Name: AntigenOmics
Type: Organization
Bio: Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and source code for related studies.
Twitter: antigenomics
Location: Czech Republic
[DRAFT] Maximum entropy modeling
🌐 Immuno Sequencing Algorithms Group web page
Data & analysis for biohack-2018 project
Classifying the status of COVID samples and SARS-CoV2-specific TCRs
Pre-employment assessments
Matching CDR3 sequences based on functional similarity
Identification and analysis of TCR motifs specific to SARS-CoV-2 epitopes
Grouping of Lymphocyte Interactions by Paratope Hotspots
HLA ligandome and parent protein Gene Ontology associations
Immunogloblin sequencing data post-analysis - a sandbox for benchmarking dedicated tools and algorithms
Immunoglobulin-like Read Filter
Antigen immunogenicity prediction
⚙️ (internal) Milib library
MiLib: yet another Java library for Next Generation Sequencing (NGS) data processing
A tool to handle immunogenomics data: from V/J references to AIRR-seq and TCR:pMHC structures.
Python library and snippets for AIRR-seq data analysis, based on our in-house scripts
[DEPRECATED]
📝 [Paper] Exploring the landscape of specific TCR precursor frequencies
A smart wrapper for V(D)J mapping software
Analyzing network structure of the known TCR-cognate epitope map
📝 [Tutorial] RepSeq data mining basics in R
📝 [Paper] Comparative analysis of immune repertoire profiling protocols
Utils for manipulations with RepSeq data. First step: utils to build V/D/J/C references.
A parser for immune receptor gene data, mainly IMGT references
Benchmark of TCR alignment and matching methods
📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
[DEPRECATED]
TCR motifs associated with infectious conditions and HLAs
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
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