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shawhahnlab's Projects

chiimp icon chiimp

Computational, High-throughput Individual Identification through Microsatellite Profiling

chiimp-paper icon chiimp-paper

Supporting code for the microsatellite genotyping paper introducing CHIIMP

lassie icon lassie

Select sites and sequences from a serially sampled alignment

mining-d icon mining-d

A tool for de novo inference of D genes from immunosequencing data in diverse species

partis icon partis

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction

sonar icon sonar

Software for Ontogenic aNalysis of Antibody Repertoires

umbra icon umbra

Python package and executable for Linux for managing Illumina sequencing runs

vquest icon vquest

Automate IMGT V-QUEST usage on imgt.org

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