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abstractastic

A tool to mine and search abstracts from pubmed and or other sources

academic-phrases

Bypass that mental block when writing your papers.

annotationquery-pubmed

Experiment using Elsevier Labs' Annotation Query library to query annotations of PubMed articles. The code is in Scala and leverage SPARK processing. The annotations for the articles are extracted from PubTator and Stanford Core NLP.

automated-figure-extraction-and-tagging

autopagerize

Infiniscroll on web pages using a large database of rules. A fully reworked fork of the original extension.

biopatternsg

This is an application that infers possible biological regulation pathways for DNA sequences, using datamining of PubMed abstracts and logical engines.

biosentvec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

bobby

Biblio extractor for PubMed

bookmarklet-maker

Tool to create bookmarklet/ javascript apps to automate the web browser.

bookmarklets

Time-saving and life-enhancing (ahem) bookmarklets

cairoshell

Cairo is a customizable, intuitive desktop environment for Windows.

cards

online index cards

citation-generator

Retrieve PubMed article information to create citations using NCBI's Entrez (API)

community_software_tools_for_ngs

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

cosmos

Algorithms that run our universe | Your personal library of every algorithm and data structure code that you will ever encounter | Ask us anything at our forum

cteligible

Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials

cv

cytodata-hackathon-2018

Ideas, code and results of the 2018 CytoData hackathon

data-science--cheat-sheet

Cheat Sheets

definition-of-cell-cycle-state-in-label-free-images

electron-dockable

dockable panel for electron (work in progress...)

fastcontext

FastContext is an optimized Java implementation of ConText algorithm (https://www.ncbi.nlm.nih.gov/pubmed/23920642).

find-genes

Application that finds genes and corresponding PubMed article related to any medical term

first-contributions

🚀✨ Help beginners to contribute to open source projects

gitignore

A collection of useful .gitignore templates

hcc-tumor-evol

Spatial and clonal dynamics of hepatocellular carcinoma

hello-world

iread-library

learn-regex

Learn regex the easy way