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academic-kickstart

algorithm

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

atgcn_count

To stat the counts of each base in a fasta file.

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

batch-run-cmd

To run commands line by line, and check each exit status.

batch_tar

To tar (and compress) files or directories in batch mode.

bgi_zhanggjlab_diskscan

A disk scanner in ZhanggjLab

bioconda-recipes

Conda recipes for the bioconda channel.

bioinfo_versatiles

a set of frequently used perl programs that faciliate bioinformatics analysis jobs, which may be very helpful especially for the new bioinformaticians

biosoft-notes

some notes about some biosofts

bold_identification

To identify taxa of given sequences via BOLD system (http://www.boldsystems.org/index.php)

books

常用书籍

books-1

我读过的书。嘿嘿，分享给你。

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

breakseqinns_then_translate

Filter the sequences by translating the protein coding genes (PCGs) with proper genetic code table, if one of the PCGs has interal stop codon, filter out this sequence.

busco_process_scripts

cigar_coordinates

To get the coordinates of a given CIGAR string.

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

common-conda-enviroments

some daily used conda environments

copenhagen2016tutorial

Tutorial of ngsTools and ANGSD for Copenhagen 2016 course students

coursecomparativemethods

Examples of application of comparative methods in R

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

deepseqanalysis

Course materials for a graduate class in applied bioinformatics for biologists

demo-source-protect

depth_stat

`depth_stat` is a tool to extract the sequence depth from depthfile and do some statstics.

divtime

Bayesian molecular clock dating tutorial with genome-scale datasets

easy-algorithm-interview-and-practice

extract_codon_alignment

To extract some codon positions (1st, 2nd, 3rd) from a CDS alignment.

extractfq

Extract some fastq reads from the beginning of the files