vanheeringen-lab Goto Github PK
Type: Organization
Bio: Repository of the group of Simon van Heeringen @ Radboud University
Location: Nijmegen, the Netherlands
Type: Organization
Bio: Repository of the group of Simon van Heeringen @ Radboud University
Location: Nijmegen, the Netherlands
fast motif scanning, but exploding memory
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
Supporting scripts and notebooks detailing how to use ANANSE with CAGE data.
Notebook files describing analyses in the ANANSE paper (Xu et al. 2021)
Automate long-running ANANSE analyses with snakemake
Textbook for the Computation for Biologists course @ Radboud University
living analysis, https://vanheeringen-lab.github.io/DevelopmentalRegulation/
Datasets for the Genomics and Big Data course
genes and genomes at your fingertips
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Dynamic machine learning database for genomics.
CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)
Single Cell Epigenome-based Inference of Activity
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.