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archives

:skull: Where everything goes to die. :skull:

awesome-reproducible-r

An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

beri

beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R

beri-isc-proposal

An isc proposal to the R Consortium to elicit their support for beRi.

biopython

Official git repository for Biopython (converted from CVS)

biosql

biosql-extensions

Extra tables and views to be loaded into a BioSQL database for proteomic and genomic applications

cookiecutter-orthoevol

A cookiecutter template for the OrthoEvol python package

cookiecutter-pypackage-travisci

A cookiecutter template for creating a python project & using travis ci for continuous integration.

datasnakes-flask-cookie

A flask template with Bootstrap 3, asset bundling+minification, starter templates, and registration/authentication. For use with cookiecutter.

datasnakes.github.io

This is the website for the Datasnakes.

explore

Community-curated topic pages on GitHub

get-beri

github-readme-templates

Easy to use README templates for a python project or python module

hackseq19docs

View team beRi's hackseq19 presentation. 📄

halvade

Parallel read alignment and variant calling using MapReduce

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

htseq-count-cluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

jetpack

A friendly package manager for R

micropower

power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA

open-source-ideas

💡 Submit ideas for science-related projects or packages here. 💡

orthoevol-snakemake

A snakemake workflow for the OrthoEvol python package.

orthoevolution

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

py3utils

Useful python utils for the everyday programmer.

pydavid

A python3 wrapper around the DAVID API

python-hands-on-tutorial

A hands-on Python3 tutorial. 🐍

pyvariant

A pipeline to call variants for RNASeq implemented with python.

qsubmitter

An R package to submit arbitrary jobs to a remote SGE cluster

queue_stat

A job queue monitor for systems that use the "qstat" command.

r-color-palettes

Comprehensive list of color palettes available in r