Topic: kallisto Goto Github
Some thing interesting about kallisto
Some thing interesting about kallisto
kallisto,RNA-Seq pipelines that use HISAT2, Kallisto, Salmon, DESeq and Sleuth.
User: ahishsujay
kallisto,A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
User: alruta
kallisto,Pipeline for analysing differential isoforms in fetal and adult cardiac fibroblasts
User: amandahsr
kallisto,Iso-seq and Kallisto integration
User: aminmahpour
kallisto,A guide to using a Seurat object in conjunction with RNA Velocity
User: basilkhuder
kallisto,A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
Organization: cbcrg
kallisto,Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system
User: chi-0828
kallisto,
Organization: cyverseuk
kallisto,Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
Organization: fanzhanglab
kallisto,GenePattern Notebook running Kallisto
Organization: genepattern
kallisto,Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Organization: gustaveroussy
kallisto,kallisto indexing and tag extraction
User: jasegehring
kallisto,Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
User: jazminvaleriano
kallisto,docker file for genomic tools
User: jianhong
Home Page: https://jianhong.github.io/genomictools/
kallisto,
User: kopalgarg
kallisto,Automated and friendly RNA-seq analysis (migrated to Parse Server)
User: lioscro
Home Page: http://alaska.caltech.edu
kallisto,A single-cell RNAseq pipeline for 10X genomics data
Organization: nf-core
Home Page: https://nf-co.re/scrnaseq
kallisto,Near-optimal RNA-Seq quantification
Organization: pachterlab
Home Page: https://pachterlab.github.io/kallisto
kallisto,kallisto | bustools workflow for pre-processing single-cell RNA-seq data
Organization: pachterlab
Home Page: https://kallistobus.tools/
kallisto,A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
Organization: pachterlab
Home Page: https://www.kallistobus.tools/
kallisto,Identification of viral RNA in single-cell RNA sequencing data
Organization: pachterlab
kallisto,RNAseq pipeline examples
User: ptdolan
kallisto,Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data
User: sk7-dotcom
kallisto,A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Organization: snakemake-workflows
kallisto,Library & executable for converting Themisto pseudoalignments to kallisto pseudoalignments.
User: tmaklin
kallisto,Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
User: trinebera
kallisto,Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2
User: washingtoncandeia
kallisto,Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.
User: washingtoncandeia
kallisto,kallisto task for RNA-seq workflow
Organization: weng-lab
kallisto,Automated and friendly RNA-seq analysis (deprecated)
Organization: wormlabcaltech
Home Page: http://alaska.caltech.edu
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