Topic: hisat2 Goto Github
Some thing interesting about hisat2
Some thing interesting about hisat2
hisat2,RNA-Seq pipelines that use HISAT2, Kallisto, Salmon, DESeq and Sleuth.
User: ahishsujay
hisat2,
User: animesh911
hisat2,Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.
User: awells-uva
hisat2,RNA-seq analyses.
User: davetang
Home Page: https://davetang.org/muse/2017/10/25/getting-started-hisat-stringtie-ballgown/
hisat2,A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queueing of the mapping operations along with parameter memory for quick and easy customization.
User: emptyewer
hisat2,This repository houses the pipeline I coded to perform differential analysis of transcriptomes from two oyster species, C. gigas and C. virginica and isolate genes in the apoptosis pathway.
User: erinwitkop
hisat2,This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 conditions.
User: groverkaushal
hisat2,Quality Control, Mapping and Reads Count for RNA-Seq Analysis
User: hanielcedraz
hisat2,Scripts to index and align Bovine genome with HISAT2
User: hernanmd
hisat2,Bioinformatics Programming - Transcriptome Assembly
User: indronil-prince
hisat2,snakemake files of the tuxedo v2 pipeline from Pertea et al 2016
User: jlanga
Home Page: https://github.com/jlanga/smsk_tuxedo2
hisat2,SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
Organization: lieberinstitute
Home Page: http://lieberinstitute.github.io/SPEAQeasy
hisat2,Build Docker container for HISAT2 and (optionally) convert to Apptainer/Singularity.
User: mattgalbraith
hisat2,Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
User: maxgreil
hisat2,Guide for aligning reads to a reference genome with HISAT2.
User: morgan-feuz
hisat2,These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
User: mppl1
hisat2,Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data
User: sk7-dotcom
hisat2,Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
User: yogionbioinformatics
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.