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airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

alaska-parse

Automated and friendly RNA-seq analysis (migrated to Parse Server)

alaska-sentry

Sentry On-Premise setup

arbor-coding-challenge

Repository for the Arbor Biotechnologies internship coding challenge.

bebi103-9-2

Pip-installable package with functions used in hw9.2

biorxiv-title-bot

Powers the @biorxivtitlebot Twitter bot.

bustools

Tools for working with BUS files

cassiopeia

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

cs155-miniproject2

cs155-miniproject3

cs2_othello

Othello Bot for CS2

django-postgres

Template repository for setting up Django with Postgres DB

dynast-thesis

fbgbp

Optimized belief propagation on arbitrary graphs with binary states.

fqc

Detect single-cell technology that was used to generate a set of FASTQ files or a single BAM file.

homepage

A lightweight, customizable single-page personal portfolio website template built with JavaScript and Sass

info

Professional information. Resume, CV, assets used by Github pages website.

ist4-pcp-analysis

Command-line tool to help bulk execution and graph plotting for Caltech IST4 Programming Challenge.

kallisto

Near-optimal RNA-Seq quantification

lfq

Lossless compression of FASTQ sequences.

minecraft-server-charts

ngs-tools

Reusable tools for working with next-generation sequencing (NGS) data

pwiz

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

pyseq-align

Python interface for seq-align C library

react-bootstrap

Template repository to set up a React app with Bootstrap

scnt-seq

Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)

scvi-tools

Deep probabilistic analysis of single-cell omics data

st_barcodemap

tissueenrichmentanalysis

This repository holds the scripts for a tissue enrichment tool, which uses a hypergeometric test, apt for C. elegans use.

wooey

A Django app that creates automatic web UIs for Python scripts.