Topic: genepattern-module Goto Github
Some thing interesting about genepattern-module
Some thing interesting about genepattern-module
genepattern-module,Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
Organization: genepattern
Home Page: https://genepattern.org
genepattern-module,
Organization: genepattern
genepattern-module,This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.
Organization: genepattern
genepattern-module,Batch effect adjustment based on negative binomial regression for RNA sequencing count data. Credits: https://github.com/zhangyuqing/ComBat-seq
Organization: genepattern
genepattern-module,Identify differentially expressed genes that can discriminate between distinct classes of samples.
Organization: genepattern
genepattern-module,Visualize expression of genes of interest after Conos.Cluster has been ran.
Organization: genepattern
genepattern-module,Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)
Organization: genepattern
genepattern-module,This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file
Organization: genepattern
genepattern-module,Visualizes the results of ComparativeMarkerSelection
Organization: genepattern
genepattern-module,GenePattern Module which implements the DiSCoVER algorithm
Organization: genepattern
genepattern-module,Determine which tryptic peptides will generate the highest signal in ESI-MS
Organization: genepattern
genepattern-module,This is basic GenePattern module written in Python 3. It can be taken as a Template for future modules. (click 'Use this template' to get started)
Organization: genepattern
genepattern-module,Imports data from the Gene Expression Omnibus (GEO)
Organization: genepattern
Home Page: https://genepattern.org
genepattern-module,Genomic Identification of Significant Targets in Cancer
Organization: genepattern
genepattern-module,Module for GSEA Julia Implementation
Organization: genepattern
genepattern-module,A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data
Organization: genepattern
genepattern-module,GenePattern Hierarchical Clustering module.
Organization: genepattern
genepattern-module,Views results of hierarchical clustering.
Organization: genepattern
genepattern-module,Repo for the dockerized HISAT2.aligner module
Organization: genepattern
genepattern-module,Repo for the HISAT2 .ndexer module which creates indices for the HISAT2.aligner module
Organization: genepattern
genepattern-module,HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'
Organization: genepattern
Home Page: https://genepattern.org
genepattern-module,GenePattern module wrapping igv.js
Organization: genepattern
genepattern-module,GenePattern Notebook running Kallisto
Organization: genepattern
genepattern-module,
Organization: genepattern
genepattern-module,Docker . module for the single cell toolkit
Organization: genepattern
genepattern-module,OpenCRAVAT as a GenePattern module
Organization: genepattern
genepattern-module,Visualizes prediction results
Organization: genepattern
genepattern-module,Salmon indexer wrapper module for GenePattern.
Organization: genepattern
Home Page: https://cloud.genepattern.org
genepattern-module,GenePattern module which implements the batch correction algorithm within Seurat.
Organization: genepattern
genepattern-module,Detect differentially expressed genes between pairs of trajectory branches
Organization: genepattern
genepattern-module,STREAM can be used to detect cell population-specific markers. This is similar to leaf branch marker gene detection. Here instead of comparing the gene expression values between leaf branches, we compare the gene expression values between cell populations
Organization: genepattern
genepattern-module,Detect marker genes that distinguish the different trajectories
Organization: genepattern
genepattern-module,Detect transition genes for each branch of the trajectory.
Organization: genepattern
genepattern-module,
Organization: genepattern
genepattern-module,Actual creation of the Elastic Principa Graph in the STREAM scRNASeq Trajectory analysis, packaged as a GenePattern module
Organization: genepattern
genepattern-module,An optional final step to optimize branching, prune the graph or extend leaf nodes following generation of the Elastic Principal Graph
Organization: genepattern
genepattern-module,
Organization: genepattern
genepattern-module,UMap or TSNE validation plots
Organization: genepattern
genepattern-module,Step one of the STREAM ssRNA-Seq Trajectory pipeline
Organization: genepattern
genepattern-module,
Organization: genepattern
genepattern-module,Generate the signature subway and stream plots
Organization: genepattern
genepattern-module,TCGA.SampleSelection wrapper module for GenePattern.
Organization: genepattern
genepattern-module,Wrapper Script for Harmony designed to work with GenePattern Module Integrator
User: redpanda185
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