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16s_pipeline

16S RNA microbiome pipeline

16s_pipeline_workshop

agilentsampledata

sample data of Agilent txt files downloaded from GSE27784

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

atacseqpipe

ATAC-seq analysis Pipeline

atacseqqc

ATAC-seq Quality Control

atacseqqcnextflow

pipeline for ATACseqQC

atacseqtfea

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioc2020workshop

Motif analysis with motifStack and dagLogo

cdqupath

Codex downstream analysis with QuPath

cellcounter

cell counter

chip-nf

An automated ChIP-seq pipeline using Nextfow

chippeakanno

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline. Hyperlink is an example of output index page.

chipseqstepbystep

Integrated analysis and visualization of ChIP-seq data using ChIPpeakAnno, GeneNetworkBuilder and TrackViewer

cleanupdtseq

This package classifies putative polyadenylation sites as true or false/internally oligodT primed

codex_qupath

The script collection for qupath

colorblindness

color set for color blindness

compartmap

Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq

cpd

CRISPR/Cas9 primer designer

daglogo

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

deeptoolsdownstream

downstream plot of deepTools

diffpeaks

detect the difference of peaks

dropseqpipe

A SingleCell RNASeq pre-processing snakemake workflow

enhancerhomologsearch

Get ENCODE data of enhancer region via H3K4me1 peaks and search homolog region for given sequences

falsepositiveclamscan

genenetworkbuilder

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

genomicinteractionhub

check the interaction hubs

genomicinteractionnodes