Topic: qtl Goto Github
Some thing interesting about qtl
Some thing interesting about qtl
qtl,
User: aabiddanda
Home Page: https://aabiddanda.github.io/qtl-power/
qtl,RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
User: adityamahadevaniyer
qtl,Scripts of Final Master Project
User: antoniogomez
qtl,Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
Organization: bioinfodlsu
Home Page: https://ricepilaf.bioinfodlsu.com
qtl,SNPs selection for QTL study.
Organization: bioinfonupeb
qtl,Linked Data Platform for Animal Breeding & Genomics
Organization: candygene
qtl,Linked Data Platform for Plant Breeding & Genomics
Organization: candygene
Home Page: https://research-software.nl/software/pbg-ld
qtl,Mirror of amplicon-qtl repository.
User: ebete
Home Page: https://gitlab.bioinf.nioo.knaw.nl/ThomG/amplicon-qtl
qtl,Mirror of micro-qtl repository.
User: ebete
Home Page: https://gitlab.bioinf.nioo.knaw.nl/ThomG/micro-qtl
qtl,R package that implements Likelihood ratio test for pleiotropy v close linkage
User: fboehm
qtl,QTL mapping workflow for BC1 population of Jaltomata.
User: gibsonmatt
qtl,R package for random-effect multiple QTL mapping in autopolyploids
User: guilherme-pereira
qtl,Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine
User: jhawe
qtl,MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
User: kentavv
qtl,Kernelized HAplotype-based MIXed model association mapping (KHAMIX)
User: ljacquin
qtl,In-silico methods for finemapping of genetic regions in inbred mice
User: matmu
qtl,🧬High-performance genetics- and genomics-related data visualization using Makie.jl
User: mmkim1210
Home Page: https://mmkim1210.github.io/GeneticsMakie.jl/dev/
qtl,Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
Organization: molepi-precmed
Home Page: https://genoscores.cphs.mvm.ed.ac.uk/
qtl,Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.
User: nathanphipps
qtl,Data, script, and output used for the guppy QTL project by Nathan Phipps and Dr. Laura Stein, starting from 5/1/2020.
User: nathanphipps
qtl,Rapid standardisation and quality control of GWAS or QTL summary statistics
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.MungeSumstats
qtl,QTLTableMiner++ tool for mining tables in scientific articles
Organization: pbr
Home Page: https://www.research-software.nl/software/qtl-tableminer
qtl,Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Organization: rajlabmssm
Home Page: https://RajLabMSSM.github.io/catalogueR
qtl,echoverse module: Example data.
Organization: rajlabmssm
Home Page: https://rajlabmssm.github.io/echodata
qtl,echoverse module: Statistical and functional fine-mapping functions.
Organization: rajlabmssm
qtl,Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Organization: rajlabmssm
Home Page: https://rajlabmssm.github.io/echolocatoR
qtl,echoverse module: Locus plot creation for fine-mapping and colocalization studies.
Organization: rajlabmssm
Home Page: https://rajlabmssm.github.io/echoplot
qtl,Create LocusZoom-style plots in R.
Organization: rajlabmssm
qtl,A comprehensive QTL analysis tool by multivariate linear mixed model.
Organization: senresearch
qtl,fastQTL analysis of methylation and expression data
User: swvanderlaan
Home Page: https://swvanderlaan.github.io/fastQTLToolKit/
qtl,A workflow based on QTLtools to run cis- and trans-QTL analyses.
User: swvanderlaan
Home Page: https://swvanderlaan.github.io/QTLToolKit/
qtl,Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
User: timflutre
Home Page: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003486
qtl,Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.
Organization: uofs-pulse-binfo
qtl,Mixed models @lme4 + custom covariances + parameter constraints
User: variani
qtl,We are investigating the genetic architecture of decayed sexual traits in asexual females of the parasitoid wasp Asobara japonia. In particular, we conduct QTL analysis for the female functional virginity trait, which referes to asexual females resisting to mate or not fertilizing eggs after mating. In the case of A. japonica, asexual females reject mating from males resulting in complete matin failure. We detected a single QTL with large phenotypic effects underlying the female functional virginity trait. Using PacBio genome assembly and transcriptomic RNAseq datasets, we found at least 131 protein coding genes underlying the single QTL, 15 of them showed differential expression in the sexual sister species Asobara tabida.
User: wen-juan
qtl,QTL mapping with binmap data
Organization: yaolab-bioinfo
Home Page: https://github.com/venyao/binQTL.shiny
qtl,GUI for binQTL
Organization: yaolab-bioinfo
Home Page: https://venyao.xyz/binQTL.shiny/
qtl,
User: ytakemon
Home Page: https://ytakemon.github.io/TheAgingKidney/
qtl,This is the public repository for information related to the thesis chapter of the same name as the title.
User: zjwinn
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