timflutre Goto Github PK

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

atelier-prediction-genomique

Atelier de prédiction et sélection génomique.

beanplot

Fork from beanplot 1.2 on the CRAN.

breedr

Statistical methods for forest genetic resources analysts

eqtlbma

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

fus2mod

hierfstat

the hierfstat package

hypred

Simulation of Genomic Data in Applied Genetics

inrae-hiring

same as "cnrs-hiring" from @mart1oeil but for INRAE

insilicut

Software for in silico cutting of genomic DNA with a restriction enzyme as in GBS/RAD-seq

jia-jannink_genetics_2012

Code from Jia and Jannink (Genetics, 2012)

mlmm.gwas

model4all

A collaborative, pedagogical initiative for statistical modelling between statisticians, and plant geneticists and ecophysiologists

modelcc83

Transposable element dynamics (Charlesworth & Charlesworth, 1983).

ncs

Data analysis and statistical modeling for groups part of "Nouveaux Commanditaires Science"

perso

My useful scripts and dot files.

plantbreedgame

A serious game to teach plant selective breeding.

pyutilstimflutre

Timothée Flutre's personal Python code

qtl

R/qtl: A QTL mapping environment

quantgen

My repo for code useful in quantitative genetics and miscellaneous scripts.

rcolony

The RColony package provides simple tools for the implementation of the Colony pedigree analysis software.

rutilsfastqc

R package with utilitary functions to handle output from FastQC.

rutilstimflutre

Timothée Flutre's personal R package (+ parts from other contributors)

spring

SPRING R package : Selecting Primary Relationships IN the General linear model

statiscript

sticsrfiles

Read and modify STICS input/output files:

sticsrpacks

Easily Install and Load 'SticsRPacks' packages

trimmomatic

Read trimming tool for Illumina NGS data.

tuto-compressed-files

Tutorial on (un)compressing files

tuto-reproducible-research

Tutorial on caring about reproducibility in scientific research.