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Name: Wageningen UR Plant Breeding
Type: Organization
Bio: Wageningen UR Plant Breeding
Location: Wageningen
Name: Wageningen UR Plant Breeding
Type: Organization
Bio: Wageningen UR Plant Breeding
Location: Wageningen
Advanced Bioinformatics Course 2012
BreeDB is a relational database which aims to support breeding for quantitative agronomical traits. The database can be explored through a web-based interface, which offers tools to present basic statistical overviews such as box plots , histograms, but also multivariate tools. Graphical genotyping tools are available to show molecular marker data and QTL data in relation to genetic linkage maps. In addition, photos of each accession can be shown together with a detailed report of observations made on this accession.
coreCollection
Comparative Subsequence Sets Analysis (CoSSA) workflows to identify haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data
ELIXIR FONDUE Datathon
Scripts used for the work described in the manuscript
Supporting information for the Manuscript: TITLE
script to download data of parrot flower power sensors using 'powerpot' API
Client to read and parse accession (MCPD passport) information from GENESYS.
Convert the genome annotation of some crops into RDF
Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.
The redirection layer for the linked-data-demo project for plants.
Explore QTL regions for candidate genes.
A simple python module to process output from MapQTL analysis.
A simple web interface for MQ2 to process output from MapQTL analysis.
Compare copies of MySQL db schemas
Description Wageningen UR Plant Breeding github repository
PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom(oe)ologous chromosomes. Also varying probabilities of preferential versus random pairing of chromosomes can be simulated, allowing to simulate amphidiploids as well as autotetraploids and intermediate forms.
PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
Pedimap: software for the visualization of genetic and phenotypic data in pedigrees
QTLTableMiner++ tool for mining tables in scientific articles
Random collection of scripts
Semantic genebank integration
Additional material for the article: Extracting knowledge networks from plant scientific literature: Potato tuber flesh color as an exemplary trait.
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