Topic: genomic-regions Goto Github
Some thing interesting about genomic-regions
Some thing interesting about genomic-regions
genomic-regions,Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.
User: aaszodi
genomic-regions,An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
User: bernatgel
genomic-regions,Phigaro is a scalable command-line tool for predicting phages and prophages
User: bobeobibo
genomic-regions,C++ library for genomic region based storage and querying
User: dancooke
genomic-regions,Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
User: dansta0804
genomic-regions,Bedfile perturbation tool
Organization: databio
Home Page: http://bedshift.databio.org
genomic-regions,A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Organization: epigen
Home Page: https://epigen.github.io/enrichment_analysis/
genomic-regions,A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Organization: epigen
Home Page: https://epigen.github.io/genome_tracks/
genomic-regions,ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Organization: remap-cisreg
Home Page: http://remap-cisreg.github.io/ReMapEnrich
genomic-regions,BedSect web server source code repository.
Organization: sraghav-lab
Home Page: http://imgsb.org/bedsect/
genomic-regions,Filter fastq file based on bed regions
User: stevekm
genomic-regions,Makefile for reference annotations for genes & genomic regions
User: stevekm
genomic-regions,Thesaurus for genetic variants
User: tkonopka
genomic-regions,:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
User: tseemann
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