rcppcore / rcpparmadillo Goto Github PK

Installing package into ‘/home/gpistre/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/RcppArmadillo_0.7.700.0.0.tar.gz'

* installing *source* package ‘RcppArmadillo’ ...
** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking whether g++ version is sufficient... (4.9.3) yes
checking LAPACK_LIBS... system LAPACK found
configure: creating ./config.status
config.status: creating inst/include/RcppArmadilloLapack.h
** libs
g++ -I/usr/share/R/include -DNDEBUG   -I"/home/gpistre/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -DARMA_64BIT_WORD -I../inst/include -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RcppArmadillo.cpp -o RcppArmadillo.o
In file included from ../inst/include/RcppArmadillo.h:38:0,
                 from RcppArmadillo.cpp:22:
../inst/include/RcppArmadilloAs.h: In instantiation of ‘Rcpp::traits::Exporter<arma::Cube<eT> >::cube_t Rcpp::traits::Exporter<arma::Cube<eT> >::get() [with T = long long int; Rcpp::traits::Exporter<arma::Cube<eT> >::cube_t = arma::Cube<long long int>]’:
../inst/include/RcppArmadilloAs.h:174:48:   required from here
../inst/include/RcppArmadilloAs.h:139:49: error: invalid cast from type ‘Rcpp::Vector<19>::iterator {aka Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19> >}’ to type ‘long long int*’
                 dims[0], dims[1], dims[2], false);
                                                 ^
/usr/lib/R/etc/Makeconf:141: recipe for target 'RcppArmadillo.o' failed
make: *** [RcppArmadillo.o] Error 1
ERROR: compilation failed for package ‘RcppArmadillo’
* removing ‘/home/gpistre/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo’
Warning in install.packages :
  installation of package ‘RcppArmadillo’ had non-zero exit status

The downloaded source packages are in
	‘/tmp/RtmpCwdr9A/downloaded_packages’

trying URL 'http://mirror.mdx.ac.uk/R/src/contrib/RcppArmadillo_0.4.550.1.0.tar.gz'

Content type 'application/x-gzip' length 936961 bytes (915 Kb)
opened URL
==================================================
downloaded 915 Kb

* installing *source* package ‘RcppArmadillo’ ...
** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked
* checking LAPACK_LIBS: divide-and-conquer complex SVD available via R-supplied LAPACK
** libs
g++ -m64 -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include"  -I../inst/include -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic  -c RcppArmadillo.cpp -o RcppArmadillo.o
In file included from ../inst/include/armadillo:97,
                 from ../inst/include/RcppArmadilloForward.h:46,
                 from ../inst/include/RcppArmadillo.h:30,
                 from RcppArmadillo.cpp:22:
../inst/include/armadillo_bits/traits.hpp: In instantiation of ‘const bool arma::is_arma_type<std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum> >::value’:
../inst/include/armadillo_bits/op_expmat_meat.hpp:51:   instantiated from here
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_elem2’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_elem1’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_col’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_row’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_diagview’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_mtGlue’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_mtOp’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_eGlue’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_eOp’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Glue’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Op’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Gen’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<unsigned int>, std::__is_floating<unsigned int> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Mat’
../inst/include/armadillo_bits/traits.hpp: In instantiation of ‘const bool arma::is_arma_type<std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum> >::value’:
../inst/include/armadillo_bits/op_expmat_meat.hpp:51:   instantiated from here
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_elem2’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_elem1’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_col’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview_row’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_subview’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_diagview’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_mtGlue’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_mtOp’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_eGlue’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_eOp’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Glue’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Op’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Gen’
../inst/include/armadillo_bits/traits.hpp:614: error: ‘std::__traitor<std::__is_integer<double>, std::__is_floating<double> >::<anonymous enum>’ is/uses anonymous type
../inst/include/armadillo_bits/traits.hpp:614: error:   trying to instantiate ‘template<class T> struct arma::is_Mat’
make: *** [RcppArmadillo.o] Error 1
ERROR: compilation failed for package ‘RcppArmadillo’
* removing ‘/usr/lib64/R/library/RcppArmadillo’

The downloaded source packages are in
    ‘/tmp/RtmpMKgQGd/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("RcppArmadillo") :
  installation of package ‘RcppArmadillo’ had non-zero exit status

checking compiled code ... WARNING
File ‘bigstatsr/libs/bigstatsr.so’:
  Found ‘__assert_fail’, possibly from ‘assert’ (C)
    Object: ‘RcppExports.o’

// [[Rcpp::export]]
arma::sp_mat referenceWij(const arma::ivec& i,
                                  const arma::ivec& j,
                                  arma::vec& d,
                                  Rcpp::Nullable<Rcpp::NumericVector> threads,
                                  double perplexity) {
#ifdef _OPENMP
    checkCRAN(threads);
#endif
  ReferenceEdges ref = ReferenceEdges(perplexity, i, j, d);
  ref.run();
  sp_mat wij = ref.getWIJ();
  return wij; // segfaults on this line ~ 75% of the time.
}

// [[Rcpp::export]]
arma::sp_mat referenceWij(const arma::ivec& i,
                                  const arma::ivec& j,
                                  arma::vec& d,
                                  Rcpp::Nullable<Rcpp::NumericVector> threads,
                                  double perplexity) {
#ifdef _OPENMP
    checkCRAN(threads);
#endif
  ReferenceEdges ref = ReferenceEdges(perplexity, i, j, d);
  ref.run();
  sp_mat wij = ref.getWIJ();
  wij = wij.t(); 
  wij = wij.t();
  return wij;  // Does not seg fault ever
}

configure: WARNING: Only g++ version 4.6 or greater can be used with RcppArmadillo.
configure: error: Please use a different compiler.
ERROR: configuration failed for package RcppArmadillo

PKG_LIBS = $(shell $(R_HOME)/bin${R_ARCH_BIN}/Rscript.exe -e "Rcpp:::LdFlags()") $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)

library('Rcpp')
library('inline')

rcpp_inc <- '
using namespace Rcpp;
'

src <- ' 
arma::mat m=Rcpp::as<arma::mat>(Mat);
arma::rowvec z=m.row(0);
arma::urowvec o=arma::sort_index(z, "ascend"); // ascending order
return wrap(o);
'

fn <- cxxfunction(signature(Mat="numeric"), src, plugin='RcppArmadillo', rcpp_inc)

set.seed(0)
mat <- matrix( c(rnorm(5*10,mean=0,sd=1), rnorm(5*10,mean=5,sd=1)), 10, 10)
mat[1,1] <- Inf

fn(mat)

> fn(mat)
     [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
[1,]    3    2    1    4    8    7    5    6    9     0

> fn(mat)
      [,1]
 [1,]    3
 [2,]    2
 [3,]    1
 [4,]    0
 [5,]    4
 [6,]    8
 [7,]    7
 [8,]    5
 [9,]    6
[10,]    9

   zgees zgels zgesvx zgetri zgges zggev
   zheevd zpotri zsytrf zsytri ztrsyl ztrtri 

arma::mat foo(const arma::mat& x) {
  return x;
}

foo(matrix(1:5, nrow = 1))
## Error in foo(matrix(mtcars[1, ], nrow = 1)) :
##  not compatible with requested type

library(debugpkg)
set.seed(123)
X <- crossprod(matrix(rnorm(25),5,5))

# this works fine
armainv(X)

# this works seeminly fine but valgrind gives an error
armainv_pd(X)

#include <RcppArmadillo.h>
// [[Rcpp::depends(RcppArmadillo)]]

using namespace Rcpp;

// [[Rcpp::export]]
NumericMatrix inv(const arma::mat& X) {
  // this works fine
  arma::mat res = arma::inv(X);
  return wrap(res);
}


// [[Rcpp::export]]
NumericMatrix inv_sympd(const arma::mat& X) {
  // this gives errors in valgrind
  arma::mat res = arma::inv_sympd(X);
  return wrap(res);
}

[jovetale@mad-325-04 debugpkg]$ R -d "valgrind --tool=memcheck --leak-check=full --track-origins=yes" --vanilla < valg.R
==19555== Memcheck, a memory error detector
==19555== Copyright (C) 2002-2013, and GNU GPL'd, by Julian Seward et al.
==19555== Using Valgrind-3.10.0 and LibVEX; rerun with -h for copyright info
==19555== Command: /usr/lib64/R/bin/exec/R --vanilla
==19555== 

R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-redhat-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(debugpkg)
> set.seed(123)
> X <- crossprod(matrix(rnorm(25),5,5))
> 
> # this works fine
> armainv(X)
          [,1]       [,2]       [,3]       [,4]      [,5]
[1,] 166.59171  54.847240 -83.687938  69.901724 18.774028
[2,]  54.84724  19.031467 -28.314272  22.515022  5.733955
[3,] -83.68794 -28.314272  43.680000 -34.961842 -8.592805
[4,]  69.90172  22.515022 -34.961842  29.764602  8.004206
[5,]  18.77403   5.733955  -8.592805   8.004206  2.866702
> 
> # this works seeminly fine but valgrind gives an error
> armainv_pd(X)
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F34084: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13F3408A: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F3447A: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F14CDC: dpotf2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F344CB: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13F14CE2: dpotf2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F344CB: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F15022: dpotf2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F344CB: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13F14D8E: dpotf2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F344CB: dpotrf_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C930D0: potrf<double> (wrapper_lapack.hpp:353)
==19555==    by 0x14C930D0: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:426)
==19555==    by 0x14C930D0: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C930D0: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C930D0: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13FB1557: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13FB155A: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13FB1650: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F2F2EE: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13F2F313: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F2F6BA: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13EBE1C9: dtrti2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F2F733: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13EBE1F2: dtrti2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F2F733: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13EBE4FA: dtrti2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F2F733: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13EBE235: dtrti2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F2F733: dtrtri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB1609: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F3A924: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13F3A92A: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13F3ACFA: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13EA830F: dlauu2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F3AD4B: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13EA8315: dlauu2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F3AD4B: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x53EA46D: lsame_ (in /usr/lib64/R/lib/libRblas.so)
==19555==    by 0x13EA852E: dlauu2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F3AD4B: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x13EA836F: dlauu2_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13F3AD4B: dlauum_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x13FB162D: dpotri_ (in /usr/lib64/R/lib/libRlapack.so)
==19555==    by 0x14C93148: potri<double> (wrapper_lapack.hpp:388)
==19555==    by 0x14C93148: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:431)
==19555==    by 0x14C93148: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C93148: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C93148: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
==19555== Conditional jump or move depends on uninitialised value(s)
==19555==    at 0x14C9314C: inv_sympd<double, arma::Mat<double> > (auxlib_meat.hpp:433)
==19555==    by 0x14C9314C: apply<arma::Mat<double> > (op_inv_meat.hpp:146)
==19555==    by 0x14C9314C: Mat<arma::Mat<double>, arma::op_inv_sympd> (Mat_meat.hpp:4549)
==19555==    by 0x14C9314C: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:17)
==19555==    by 0x14C919EA: debugpkg_inv_sympd (RcppExports.cpp:27)
==19555==    by 0x4F0F6A7: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4F13A: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F5139F: ??? (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4EF42: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F50386: Rf_applyClosure (in /usr/lib64/R/lib/libR.so)
==19555==    by 0x4F4ED1E: Rf_eval (in /usr/lib64/R/lib/libR.so)
==19555==  Uninitialised value was created by a stack allocation
==19555==    at 0x14C92F85: inv_sympd(arma::Mat<double> const&) (arma_inv.cpp:15)
==19555== 
          [,1]       [,2]       [,3]       [,4]      [,5]
[1,] 166.59171  54.847240 -83.687938  69.901724 18.774028
[2,]  54.84724  19.031467 -28.314272  22.515022  5.733955
[3,] -83.68794 -28.314272  43.680000 -34.961842 -8.592805
[4,]  69.90172  22.515022 -34.961842  29.764602  8.004206
[5,]  18.77403   5.733955  -8.592805   8.004206  2.866702
> 
> # R -d "valgrind --tool=memcheck --leak-check=full --track-origins=yes" --vanilla < valg.R
> 
==19555== 
==19555== HEAP SUMMARY:
==19555==     in use at exit: 34,969,172 bytes in 17,153 blocks
==19555==   total heap usage: 33,759 allocs, 16,606 frees, 64,147,377 bytes allocated
==19555== 
==19555== LEAK SUMMARY:
==19555==    definitely lost: 0 bytes in 0 blocks
==19555==    indirectly lost: 0 bytes in 0 blocks
==19555==      possibly lost: 0 bytes in 0 blocks
==19555==    still reachable: 34,969,172 bytes in 17,153 blocks
==19555==         suppressed: 0 bytes in 0 blocks
==19555== Reachable blocks (those to which a pointer was found) are not shown.
==19555== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==19555== 
==19555== For counts of detected and suppressed errors, rerun with: -v
==19555== ERROR SUMMARY: 25 errors from 25 contexts (suppressed: 1 from 1)

require(Matrix)
x = rsparsematrix(10000, 50, .05)
x2 = crossprod(x)

x2@x #only upper triangle part!

#include <RcppArmadillo.h>
// [[Rcpp::depends(RcppArmadillo)]]

using namespace Rcpp;
using namespace arma;

// [[Rcpp::export]]
sp_mat foo(sp_mat X) {
  return X;
}
foo(crossprod(rsparsematrix(10000, 5, .01)))

library(RcppArmadillo)
RcppArmadillo.package.skeleton( "foobar" )

R CMD build foobar
R CMD check foobar_1.0.tar.gz

* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
Warning: parse error in file 'foobar-Ex.R':
20:11: unexpected symbol
19: 
20: ~~ simple examples
              ^
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... ERROR
Running examples in ‘foobar-Ex.R’ failed
The error most likely occurred in:

> ### Name: foobar-package
> ### Title: What the package does (short line)
> ### Aliases: foobar-package foobar
> ### Keywords: package
> 
> ### ** Examples
> 
> ~~ simple examples of the most important functions ~~
Error: unexpected symbol in "~~ simple examples"
Execution halted
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: File `Rd.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 

l.4 \usepackage
               {makeidx}^^M
!  ==> Fatal error occurred, no output PDF file produced!
* checking PDF version of manual without hyperrefs or index ... ERROR
* DONE

edd@max:~$ g++ -v 2>&1 | awk '/^.*g.. version/ {print $3}'
5.2.1
edd@max:~$ 

> library(devtools)
> install_github('RcppCore/RcppArmadillo')
Downloading GitHub repo RcppCore/RcppArmadillo@master
Installing RcppArmadillo
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore CMD  \
  INSTALL  \
  '/tmp/RtmpAKuXjx/devtools655039c1e2f9/RcppCore-RcppArmadillo-2f9f114'  \
  --library='/home/psenin/R/x86_64-pc-linux-gnu-library/3.2' --install-tests 
* installing *source* package ‘RcppArmadillo’ ...
* checking LAPACK_LIBS: divide-and-conquer complex SVD available via system LAPACK
** libs
ccache clang++ -Qunused-arguments -I/usr/share/R/include -DNDEBUG   -I"/home/psenin/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"  -I../inst/include -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c RcppArmadillo.cpp -o RcppArmadillo.o
In file included from RcppArmadillo.cpp:22:
In file included from ../inst/include/RcppArmadillo.h:30:
In file included from ../inst/include/RcppArmadilloForward.h:46:
In file included from ../inst/include/armadillo:50:
../inst/include/armadillo_bits/compiler_setup.hpp:273:7: error: builtin feature check macro requires a parenthesized identifier
  #if __has_attribute(__const__)
      ^
../inst/include/armadillo_bits/compiler_setup.hpp:273:32: error: expected end of line in preprocessor expression
  #if __has_attribute(__const__)
                           ^
2 errors generated.
make: *** [RcppArmadillo.o] Erreur 1
ERROR: compilation failed for package ‘RcppArmadillo’
* removing ‘/home/psenin/R/x86_64-pc-linux-gnu-library/3.2/RcppArmadillo’
Erreur : Command failed (1)

> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=fr_FR.UTF-8        LC_COLLATE=fr_FR.UTF-8    
 [5] LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
other attached packages:
[1] devtools_1.9.1       BiocInstaller_1.20.1
loaded via a namespace (and not attached):
[1] httr_1.0.0    R6_2.1.1      magrittr_1.5  tools_3.2.2   curl_0.9.4   
[6] memoise_0.2.1 stringi_1.0-1 stringr_1.0.0 digest_0.6.8 

SEXP R_igraph_srand(SEXP pseed) {
  unsigned seed=INTEGER(AS_INTEGER(pseed))[0];
  srand(seed);
  return R_NilValue;
}

srand <- function(seed) {
  seed <- as.numeric(seed)
  if (length(seed) != 1) { stop("Length of `seed' must be 1") }
  res <- .Call("R_igraph_srand", seed, PACKAGE="igraph")
  invisible(res)
}

40x16x1: no errors, wrong result
80x16x1: error: addition: can't interpret cube with dimensions 1x1072642625x1 as a matrix with dimensions 16x1
90x21x1: valgrind errors, crash
99x21x1: valgrind errors, no crash, wrong result
99x21x2: no errors, right result

flm <- fastLmPure( cbind(1, log(trees$Girth)), log(trees$Volume) )
print(flm)
$coefficients
          [,1]
[1,] -2.353325
[2,]  2.199970

$stderr
           [,1]
[1,] 0.23066284
[2,] 0.08983455

$df.residual
[1] 29

library("RcppArmadillo")
library("inline")
code <- "
Rcpp::NumericVector input_(input);
IntegerVector dim = input_.attr(\"dim\");
arma::cube disturb(input_.begin(), dim[0], dim[1], dim[2], false);
disturb[0, 0, 0] = 45;
return wrap(2);
"
Test <- cxxfunction(signature(input = "numeric"), plugin = "RcppArmadillo", body = code)
input <- array(1e7, 2, 2)
Test(input)
# no change in memory usage

dim(input) <- c(2, 1e7, 2)
gc()
Test(input)
# no change in memory usage

dim(input) <- c(2, 2, 1e7)
gc()
Test(input)
# spike in memory usage

dim(input) <- c(20, 2, 1e6)
gc()
Test(input)
# no change in memory usage
library("RcppArmadillo")
library("inline")
code <- "
Rcpp::NumericVector input_(input);
IntegerVector dim = input_.attr(\"dim\");
arma::cube disturb(input_.begin(), dim[0], dim[1], dim[2], false);
disturb[0, 0, 0] = 45;
return wrap(2);
"
Test <- cxxfunction(signature(input = "numeric"), plugin = "RcppArmadillo", body = code)
input <- array(0, c(1e7, 2, 2))
Test(input)
# no change in memory usage

dim(input) <- c(2, 1e7, 2)
gc()
Test(input)
# no change in memory usage

dim(input) <- c(2, 2, 1e7)
gc()
Test(input)
# spike in memory usage

dim(input) <- c(20, 2, 1e6)
gc()
Test(input)
# no change in memory usage

* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘Rcpp’
A package should be listed in only one of these fields.

dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/[LIBRARAY_NAME]/libs/fastplm.so, 6): Symbol not found: _wrapper_ddot_
  Referenced from: /Library/Frameworks/R.framework/Versions/3.3/Resources/library/[LIBRARAY_NAME]/libs/fastplm.so
  Expected in: flat namespace

4.6.*|4.7.*|4.8.*|4.9.*|5.*|6.*|7.*)

SEXP rcpparma_hello_world(){

    arma::mat m1 = arma::eye<arma::mat>( 3, 3 ) ;
    arma::mat m2 = arma::eye<arma::mat>( 3, 3 ) ;

    List res ;                                  
    res["mat+mat"] = m1 + 3 * ( m1 + m2 );
    return res ;
}