xiyupeng Goto Github PK
Name: Xiyu
Type: User
Company: Memorial Sloan Kettering Cancer Center
Bio: biostatistics/bioinformatics
Location: New York
Xiyu's Projects
amplici
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
amplici-umi
AmpliCI with UMI information
hmm-model-for-mi-seq
Baum Welch algorithm to solve the HMM model for Mi-seq data
kallisto
Near-optimal RNA-Seq quantification
lda_examples
This folder contains all files for the github pages.
mcmc
MCMC for Hierarchical possion models
metacell
Metacell - Single-cell mRNA Analysis
microbiome-16s
R codes for statistical analysis on microbiome 16S Amplicon Data
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
motif
Use Branch And Bound Strategy to find motif of several DNA sequences
raw_loess
rcpparmadillo
Rcpp integration for the Armadillo templated linear algebra library
rmath
The R Standalone Math Library with modern CMake support
rna-seq-tsne
The art of using t-SNE for single-cell transcriptomics
spatopic
An R package for fast topic inference to identify tissue architecture in multiplexed images
ssco
Find the genes involved in start-stop codon overlaping in prokaryotic genome
topic_modeling
Latent Dirichlet Allocation with application on Longitudinal Flow Cytometry Data
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