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afc

Calculates allelic Fold Change (aFC) using standard input files for fastQTL.

allelecounter

Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.

array-mid

Get middle element in an N-element array (either left, right, or both elements if N is even)

cellphonedb

clockwork

CRyPTIC data processing pipelines

cncdriver

code

Source code for the book Rust in Action

cortex

reference free variant assembly

dendsort

dendsort: Modular Leaf Ordering Methods for Dendrogram Nodes

edlibr

R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).

fsig-snv

FSig-SNV: An R package detecting SNV coding and non-coding drivers in cancer

gapmap

gapmap: Functions for Drawing Gapped Cluster Heatmaps with ggplot2

hierarchical-hotnet

Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.

hla-la

Fast HLA type inference from whole-genome data

hotnet

HotNet is an algorithm for finding significantly altered subnetworks in a large gene interaction network.

hotnet2

HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

kmerificator

mummer3

MUMmer3

naibr

Novel Adjacency Identification with Barcoded Reads

nextflow

A DSL for data-driven computational pipelines

nomenclature

This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".

paga

Mapping out the coarse-grained connectivity structures of complex manifolds.

phaser

phasing and Allele Specific Expression from RNA-seq

poilogcpp

Convert poilog to use C++ and Rcpp

raig

rmtstat

An R package for distributions from random matrix theory

rook

A web server interface for R

scfind

simvcf

generate germline and somatic variants in VCF format

single-cell-curation

Code and documentation for the curation of cellxgene datasets