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Hello! Thanks for sharing your work in bioRxiv. I was wondering if you could make available the fasta sequences for all 96 molbit sequences after 31 iterations of the evolutionary model? I could find the fasta with the corresponding squiggles in Supp Figure 5, but a plain txt/csv file with the individual fasta sequences would be very useful. Where can I find this? Thanks so much, and congrats on the preprint! Eva

Hi, very interesting work!

I would like to design some shorter sequences (~20mers) with a high distance in dtw space, so am trying to run the molbit_design jupyter notebook. I've came across some issues regarding this:

1. Is it possible to link to the nupyck package on your documentation? Googling it might result in installing a wrong package/version.
   (also unrelated to your work but maybe helpful for others, the nupyck install instructions / module structure was broken for me because it used relative referencing in a submodule; fixed by moving the helper scripts in "apps" to the "nupyck" folder and editing the "init.py" to reflect that)

2. "natsort" and "imageio" packages also need to be installed

3. I cannot find the pore_utils package that contains the smith_waterman algorithm.

Could you help me with the 3rd point?

Best wishes,
Patrick