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2019-spotted-dna-data

Sequencing data for our 2019 Nature Communications paper

aging_data

This repository is available to the public in conjuction with the aging paper.

combinatorial_primer_project

cupyck

cuda-accelerated multistranded partition function

data-nbt17

Data for paper "Random Access in Large-Scale DNA Data Storage"

data-ncomms19-nanopore

data for Nature Communicates 2019. Title: DNA Assembly for Nanopore Data Storage Readout

deep-molecules

Protein Sequence AutoEncoders

dmfwizard

Python library for designing digital microfluidic electrode boards with KiCad

dna-nanopore-computing

Analysis pipeline for running DNA circuits on the nanopore

electrode_board_template_100x74

KiCad project template for custom electrode boards

end2endcontroller

controller software for end2end project

hamiltonpsd

simple serial protocol wrapper for hamilton PSD pumps.

imgupload

kinda

Kinetic DNA strand displacement analyzer

mach-nix

Create highly reproducible python environments

nanoporeter-data

Data-only repository for the NanoporeTER paper.

nanoporeters

Code repository for 2019 NanoporeTERs paper.

nix-project-template

A simple template for setting up your experiment/project with Nix package management

nucleaseq

Methods for processing NucleaSeq data.

pastor-sequencing

pd-electrodeboard-pcb-v3

MISL Electrode Board v3 for PurpleDrop

pd-electrodeboard-pcb-v4

pd-electrodeboard-pcb-v6

pd-electrodeboard-pcb-v7

Electrode Board Design for the PurpleDrop

pd-frame-50x50

PCB frame for purpledrop electrode board with 50x50mm top plate

pd-frame-50x75

PCB frame for 50x75mm top plate on Purpledrop

pdcam

pdclient

Python client for purple drop

porcupine

Porcupine is a molecular tagging system to tag physical objects with DNA.

poreception