Documentation for installing and running the molbit_design notebooks is incomplete about porcupine HOT 1 CLOSED

Hi! I apologize for just seeing this now.

1. Unfortunately, no it is not possible, as the license of NUPACK is restrictive and the python bindings used here cannot be released. However, since I wrote this, someone released a mfe package that works reasonably well, and I've been using that for other projects since it came out. The package is seqfold. It returns similar results to NUPACK, although not exact. Good enough for this application.
2. Thanks, I'll add that to the documentation.
3. Sorry, this was overlooked when preparing the submission. You can now find it at pore-utils where it can be pip installed. I'm sure there's a better way to import within the context of this project, however, that's the quickest way to make this available.

from porcupine.