Comments (2)
Hi Eva,
Thanks for reaching out! You can find the sequences here: https://github.com/uwmisl/Porcupine/blob/master/porcupine_sequences.fa Is this what you had in mind? We intend to include this as a supplementary file with the final publication as well, so it's easier to find.
Just want to note -- If you end up using any of these sequences for your RNA barcoding, I would recommend selecting those with read counts that hovered around the median (e.g. 11, 29, 37, 44, 67 as in Supp. Fig 8 in the preprint), due to the still-unexplained variation in read counts. That way no correction should be needed. (Only making this suggestion since we'd talked briefly about sequences at LC19. If you use these in any way, I would be curious to know how it goes!)
Best,
Katie
from porcupine.
Hi Katie,
Thank you very much! Yes, that's exactly what I was looking for :)
Yes, I agree would be useful to place them as supp File in the final publication, as I was unable to find them when looking for them.
Will definetely keep you guys posted on how it goes if we use them for RNA :) We will probably do a small trial first.
Thanks again!
Eva
from porcupine.
Related Issues (2)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from porcupine.