Topic: omop Goto Github
Some thing interesting about omop
Some thing interesting about omop
omop,SOCRATex: Staged Optimization of Curation, Regularization, and Annotation of clinical Text
Organization: abmi
omop,omopcept : an R package to access OMOP conCEPTs (all pros, no cons!) and flexible tidyverse compatible R functions for querying.
User: andysouth
omop,A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.
Organization: answerdigital
Home Page: https://answerdigital.github.io/oxford-omop-data-mapper
omop,A web application to find patients, build cohorts and visualize health records
Organization: aphp
Home Page: https://docs.cohort360.org
omop,eds-scikit is a Python library providing tools to process and analyse OMOP data
Organization: aphp
Home Page: https://aphp.github.io/eds-scikit
omop,Medically-informed data preprocessing for machine learning
Organization: bcbi
omop,Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data
Organization: biomedsciai
Home Page: https://biomedsciai.github.io/DPM360/
omop,A web app for visualization and analysis of healthcare data using OMOP CDM.
User: borisdelange
Home Page: https://borisdelange.github.io/LinkR/
omop,OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
User: callahantiff
Home Page: http://tiffanycallahan.com/OMOP2OBO_Dashboard
omop,Translational Computational Phenotyping
User: callahantiff
omop,The OMOP Common Data Model(v6) implemented in Django (v3)
Organization: centre-for-health-informatics
omop,A software toolkit for the interconversion of standard data models for phenotypic data
Organization: cnag-biomedical-informatics
omop,:notebook: .Net library for OMOP CDM management
User: dermatologist
Home Page: https://nuchange.ca
omop,SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM
Organization: edencehealth
omop,core of pymedext source
Organization: equipe22
Home Page: https://equipe22.github.io/pymedext_core/
omop,Carrot: Convenient And Reusable Rapid Omop Transformer.
Organization: health-informatics-uon
Home Page: https://carrot4omop.ac.uk
omop,PCORnet Ontology to OMOP - beta!
Organization: i2b2-omop
omop,Extracting Patients' information from clinical notes and export them to an OMOP CDM database.
Organization: ieeta-pt
omop,This pilot project deploys a supplemental OMOP table to map external measures of rurality (RUCC and RUCA).
User: jerrodanzalone
omop,Pure Julia implementation of the OMOP Common Data Model (CDM)
Organization: juliahealth
Home Page: https://juliahealth.org/OMOPCommonDataModel.jl/stable/
omop,Notebooks and scripts for querying programmatically source and OMOP data
Organization: lifebit-ai
omop,Notebooks and scripts for querying programmatically source and OMOP data
Organization: lifebit-ai
omop,A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR and the OMOP CDM
Organization: miracum
Home Page: https://miracum.github.io/recruit
omop,Mapping the MIMIC-III database to the OMOP schema
Organization: mit-lcp
omop,This repo contains analysis performed for paper "A comparative patient-level prediction study in OMOP CDM – insights from study on synthetic data".
User: najiaahmadi
Home Page: https://www.nature.com/articles/s41598-024-52723-y
omop,Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)
Organization: national-covid-cohort-collaborative
Home Page: https://national-covid-cohort-collaborative.github.io/guide-to-n3c-v1/
omop,Patient 'omics data in OMOP format
Organization: ncbi-codeathons
omop,Examples of exploring synthetic healthcare data from the Agency for Healthcare Research and Quality in the United States Department of Health and Human Services, and MITRE Corporation.
Organization: onefact
Home Page: https://onefact.github.io/synthetic-healthcare-data/
omop,Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6
User: pedro-cmat
omop,The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)
Organization: pedsnet
omop,Runs CQL phenotype definitions against an OMOP repository
Organization: phema
Home Page: https://phema.github.io/
omop,Export Phenopackets from OMOP
Organization: phenopackets
omop,Holds the OMOP CDM folder structure containing the queries, Usagi CSV's and custom concept CSV's (used by Rabbit-in-a-Blender)
Organization: radar-azdelta
omop,An ETL pipeline to transform your EMP data to OMOP
Organization: radar-azdelta
Home Page: https://radar-azdelta.github.io/Rabbit-in-a-Blender/
omop,The work of OMOP on the dbt for demo in OHDSI Symposium 2022
Organization: sidataplus
omop,Load OHDSI Vocab from Athena into PostgreSQL DB
Organization: sidataplus
omop,SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.
Organization: stjude-biohackathon
omop,Transformation from PRIAS to the OMOP CDM
Organization: thehyve
Home Page: https://thehyve.github.io/ohdsi-etl-prias/
omop,OMOP standardization pipeline for ICU databases
User: usm-chu-fguyon
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