A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR and the OMOP CDM
Home Page: https://miracum.github.io/recruit
License: GNU Affero General Public License v3.0
![renovate[bot] avatar](https://avatars.githubusercontent.com/in/2740?v=4 "renovate[bot]")
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 295 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 2 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
Currently, all resources are sent to the fhir server as a single transaction. It could consists of thousands of resources at once. Instead, we should chunk the resources into multiple smaller transactions.
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 295 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 2 |
| Status | Count |
|---|---|
| 🔍 Total | 290 |
| ✅ Successful | 252 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 37 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 290 |
| ✅ Successful | 252 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 37 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 295 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 2 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 295 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 2 |
Large recommendation lists are currently loaded and displayed all at once. Especially loading the list causes multiple requests to the fhir server for each subject, causing the site to load exceptionally slow.
We should consider loading pages of subjects, eg. the most recent 50 or so subjects, instead of everything at once.
There is an error with this repository's Renovate configuration that needs to be fixed. As a precaution, Renovate will stop PRs until it is resolved.
Location: .renovaterc.json
Error type: The renovate configuration file contains some invalid settings
Message: packageRules: You have included an unsupported manager in a package rule. Your list: docker. Supported managers are: (ansible, ansible-galaxy, argocd, asdf, azure-pipelines, batect, batect-wrapper, bazel, bazelisk, bitbucket-pipelines, buildkite, bundler, cake, cargo, cdnurl, circleci, cloudbuild, cocoapods, composer, conan, deps-edn, docker-compose, dockerfile, droneci, fleet, flux, fvm, git-submodules, github-actions, gitlabci, gitlabci-include, gomod, gradle, gradle-wrapper, helm-requirements, helm-values, helmfile, helmsman, helmv3, hermit, homebrew, html, jenkins, jsonnet-bundler, kotlin-script, kubernetes, kustomize, leiningen, maven, maven-wrapper, meteor, mint, mix, nix, nodenv, npm, nuget, nvm, osgi, pip-compile, pip_requirements, pip_setup, pipenv, poetry, pre-commit, pub, puppet, pyenv, regex, ruby-version, sbt, setup-cfg, swift, tekton, terraform, terraform-version, terragrunt, terragrunt-version, tflint-plugin, travis, velaci, woodpecker).
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
These updates are currently rate-limited. Click on a checkbox below to force their creation now.
fhir-pseudonymizer, ghcr.io/miracum/recruit/list, ghcr.io/miracum/recruit/notify, ghcr.io/miracum/recruit/query, ohdsi)actions/upload-artifact, ghcr.io/chgl/kube-powertools, ghcr.io/miracum/ig-build-tools, oxsecurity/megalinter)@fortawesome/fontawesome-svg-core, @fortawesome/free-solid-svg-icons, @fortawesome/vue-fontawesome)These updates have all been created already. Click a checkbox below to force a retry/rebase of any.
@babel/eslint-parser, @opentelemetry/api, @opentelemetry/exporter-jaeger, @opentelemetry/exporter-trace-otlp-grpc, @opentelemetry/instrumentation, @opentelemetry/instrumentation-express, @opentelemetry/instrumentation-http, @opentelemetry/instrumentation-pino, @opentelemetry/resources, @opentelemetry/sdk-trace-base, @opentelemetry/sdk-trace-node, @opentelemetry/semantic-conventions, Hl7.Fhir.R4, axios, buefy, core-js, csharpier, csv-stringify, docker.io/bitnami/kubectl, docker.io/curlimages/curl, docker.io/cypress/included, docker.io/hapiproject/hapi, docker.io/jaegertracing/all-in-one, docker.io/library/gradle, docker.io/library/node, docker.io/library/python, docker.io/library/traefik, docker.io/ohdsi/atlas, docker.io/ohdsi/webapi, eslint, eslint-plugin-vue, fhir-pseudonymizer, fhirpath, ghcr.io/miracum/fhir-pseudonymizer, gradle, ohdsi, pino, pytest, sass, vue, vue-template-compiler, checkstyle, io.micrometer:micrometer-core, io.micrometer:micrometer-registry-prometheus, org.postgresql:postgresql, ca.uhn.hapi.fhir:hapi-fhir-client-okhttp, ca.uhn.hapi.fhir:hapi-fhir-structures-r4, ca.uhn.hapi.fhir:hapi-fhir-client, com.fasterxml.jackson.core:jackson-annotations, ca.uhn.hapi.fhir:hapi-fhir-base, org.apache.camel.springboot:camel-micrometer-starter, org.apache.camel.springboot:camel-spring-boot-starter, org.apache.camel.springboot:camel-servlet-starter, org.apache.camel.springboot:camel-rest-starter, org.apache.camel:camel-cron, org.apache.camel:camel-http, com.diffplug.spotless:spotless-plugin-gradle, org.apache.camel:camel-fhir, org.apache.camel:camel-jsonpath, io.spring.gradle:dependency-management-plugin, org.apache.camel:camel-jackson, org.springframework.boot:spring-boot-gradle-plugin, org.apache.camel:camel-sql)docker-compose/docker-compose.probe.yaml
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actions/checkout v4.1.1@b4ffde65f46336ab88eb53be808477a3936bae11ghcr.io/chgl/kube-powertools v2.2.32@sha256:f2d27b59839cec4dd73da763e354d6515a7a297aeebffa8f07fac4c977123f26ubuntu 22.04
src/settings.gradle
src/buildSrc/build.gradle
org.springframework.boot:spring-boot-gradle-plugin 3.1.5io.spring.gradle:dependency-management-plugin 1.1.3com.google.cloud.tools:jib-gradle-plugin 3.4.0com.diffplug.spotless:spotless-plugin-gradle 6.22.0io.freefair.gradle:lombok-plugin 8.4de.undercouch:gradle-download-task 5.5.0src/buildSrc/src/main/groovy/org.miracum.recruit.java-application-conventions.gradle
ca.uhn.hapi.fhir:hapi-fhir-base 6.8.5ca.uhn.hapi.fhir:hapi-fhir-client 6.8.5ca.uhn.hapi.fhir:hapi-fhir-structures-r4 6.8.4ca.uhn.hapi.fhir:hapi-fhir-client-okhttp 6.8.5com.squareup.okhttp3:okhttp 4.12.0net.logstash.logback:logstash-logback-encoder 7.4org.postgresql:postgresql 42.6.0io.micrometer:micrometer-registry-prometheus 1.11.5io.micrometer:micrometer-core 1.11.5org.apache.commons:commons-text 1.11.0jacoco 0.8.11checkstyle 10.12.4src/buildSrc/src/main/groovy/org.miracum.recruit.java-common-conventions.gradle
src/buildSrc/src/main/groovy/org.miracum.recruit.java-library-conventions.gradle
src/notify/build.gradle
org.springframework.retry:spring-retry 2.0.5jakarta.mail:jakarta.mail-api 2.1.2src/query/build.gradle
ua.eshepelyuk.ManifestClasspath 1.0.0org.apache.camel:camel-sql 4.1.0org.apache.camel:camel-jackson 4.1.0org.apache.camel:camel-jsonpath 4.1.0org.apache.camel:camel-fhir 4.1.0org.apache.camel:camel-http 4.1.0org.apache.camel:camel-cron 4.1.0org.apache.camel.springboot:camel-rest-starter 4.1.0org.apache.camel.springboot:camel-servlet-starter 4.1.0org.apache.camel.springboot:camel-spring-boot-starter 4.1.0org.apache.camel.springboot:camel-micrometer-starter 4.1.0com.fasterxml.jackson.core:jackson-annotations 2.15.3net.minidev:json-smart 2.5.0com.github.slugify:slugify 3.0.6com.approvaltests:approvaltests 22.3.3com.google.code.gson:gson 2.10.1
src/gradle/wrapper/gradle-wrapper.properties
gradle 8.4
charts/recruit/values.yaml
ghcr.io/miracum/recruit/omop/init v3.3.2-cdm5.3.1@sha256:40521fabaa73f9d01daec43ba9d510fc0f89b73714515006b70333c4b043d52cghcr.io/miracum/recruit/query v10.1.8ghcr.io/miracum/recruit/notify v10.1.8ghcr.io/miracum/recruit/list v10.1.8docker.io/curlimages/curl 8.4.0@sha256:4a3396ae573c44932d06ba33f8696db4429c419da87cbdc82965ee96a37dd0af
charts/recruit/Chart.yaml
hapi-fhir-jpaserver 0.14.0mailhog 5.2.3ohdsi 0.21.9fhir-pseudonymizer 0.5.7
src/list/frontend/package.json
@dsb-norge/vue-keycloak-js 2.4.0@fortawesome/fontawesome-svg-core 1.2.36@fortawesome/free-solid-svg-icons 5.15.4@fortawesome/vue-fontawesome 2.0.10axios 1.6.0buefy 0.9.25core-js 3.33.2csv-stringify 6.4.4fhirclient 2.5.2fhirpath 3.8.1vue 2.7.15vue-router 3.6.5vuejs-logger 1.5.5@babel/eslint-parser 7.22.15@vue/cli-plugin-babel 5.0.8@vue/cli-plugin-eslint 5.0.8@vue/cli-plugin-router 5.0.8@vue/cli-plugin-unit-jest 5.0.8@vue/cli-service 5.0.8@vue/eslint-config-airbnb 6.0.0@vue/test-utils 1.3.6@vue/vue2-jest 29.2.2cypress-keycloak 2.0.1eslint 8.52.0eslint-config-prettier 9.1.0eslint-plugin-vue 9.18.1jest 29.7.0pino 8.16.1sass 1.69.5sass-loader 14.0.0vue-template-compiler 2.7.15@vue/cli-plugin-e2e-cypress 5.0.8cypress 13.4.0src/list/package.json
src/list/server/package.json
@opentelemetry/api 1.6.0@opentelemetry/exporter-jaeger 1.17.1@opentelemetry/exporter-trace-otlp-grpc 0.44.0@opentelemetry/instrumentation 0.44.0@opentelemetry/instrumentation-express 0.33.2@opentelemetry/instrumentation-http 0.44.0@opentelemetry/instrumentation-pino 0.34.2@opentelemetry/resources 1.17.1@opentelemetry/sdk-trace-base 1.17.1@opentelemetry/sdk-trace-node 1.17.1@opentelemetry/semantic-conventions 1.17.1axios 1.6.0connect-history-api-fallback 2.0.0cors 2.8.5debug 4.3.4express 4.18.2express-bearer-token 2.4.0express-jwt 8.4.1express-prom-bundle 7.0.0helmet 7.1.0http-proxy-middleware 2.0.6js-yaml 4.1.0jwks-rsa 2.1.5node-http-proxy-json 0.1.9path 0.12.7pino 8.17.2pino-http 9.0.0prom-client 15.1.0retry-axios 3.1.3
.config/dotnet-tools.json
csharpier 0.25.0tests/chaos/tester/tester.csproj
System.CommandLine 2.0.0-beta4.22272.1Polly 8.2.1Hl7.Fhir.R4 5.4.0
src/query/tests/e2e/requirements.in
fhirclient ==4.1.0pytest ==7.4.3retrying ==1.3.4
src/query/tests/e2e/requirements.txt
certifi ==2023.11.17charset-normalizer ==3.3.2fhirclient ==4.1.0idna ==3.6iniconfig ==2.0.0isodate ==0.6.1packaging ==23.2pluggy ==1.3.0pytest ==7.4.3requests ==2.31.0retrying ==1.3.4six ==1.16.0urllib3 ==2.1.0
| Status | Count |
|---|---|
| 🔍 Total | 256 |
| ✅ Successful | 218 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 36 |
| ❓ Unknown | 0 |
| 🚫 Errors | 2 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 177 |
| ✅ Successful | 152 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 24 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 256 |
| ✅ Successful | 219 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 36 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 290 |
| ✅ Successful | 252 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 37 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
| Status | Count |
|---|---|
| 🔍 Total | 338 |
| ✅ Successful | 296 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 41 |
| ❓ Unknown | 0 |
| 🚫 Errors | 1 |
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