Hi, I'm trying to plot in Markdown but it ain't working. <div class="snippet-clipb

Hi <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="

How to plot in rMarkdown? about complex-upset HOT 2 CLOSED

krassowski commented on May 28, 2024

How to plot in rMarkdown?

from complex-upset.

Comments (2)

krassowski commented on May 28, 2024

Hi @cristobalcar, thanks for opening this issue. It works as any other ggplot graphic and does work in R markdown well. I am happy to help you with your problem, but please let me help you by expanding your example (what is x?). Ideally, please try to use the example code:

library(ggplot2)
library(ComplexUpset)

if(!require(ggplot2movies)) install.packages('ggplot2movies')
movies = ggplot2movies::movies
genres = c('Action', 'Animation', 'Comedy', 'Drama', 'Documentary', 'Romance')

upset(
    movies,
    genres,
    annotations = list(
        'Length'=list(
            aes=aes(x=intersection, y=length),
            geom=geom_boxplot()
        ),
        'Rating'=list(
            aes=aes(x=intersection, y=rating),
            geom=list(
                # if you do not want to install ggbeeswarm, you can use geom_jitter
                ggbeeswarm::geom_quasirandom(aes(color=log10(votes))),
                geom_violin(width=1.1, alpha=0.5)
            )
        )
    ),
    queries=list(
        upset_query(
            intersect=c('Drama', 'Comedy'),
            color='red',
            fill='red',
            only_components=c('intersections_matrix', 'Intersection size')
        ),
        upset_query(
            set='Drama',
            fill='blue'
        ),
        upset_query(
            intersect=c('Romance', 'Drama'),
            fill='yellow',
            only_components=c('Length')
        )
    ),
    min_size=10,
    width_ratio=0.1
)