y axis units for the intersection size and stacking plots about complex-upset HOT 7 CLOSED

Yes and yes.

1. See https://krassowski.github.io/complex-upset/articles/Examples_R.html#display-percentages
2. See https://krassowski.github.io/complex-upset/articles/Examples_R.html#showing-intersection-sizeunion-size-ratio - you can use multiple intersection_size()

from complex-upset.

Closing as answered, please reopen with more details (code that you tried) if the links above did not lead you to a solution.

from complex-upset.

Thank you! No. 1 worked well!

No.2 i'm still struggling to find a way around.

I would like to produce something like the figure below, but show exclusive intersection size (e.g. bar in pink) with the added inclusive intersection size (e.g. bar in turquoise) stacked above (i.e. bars stacked on the same plot instead of on two plots stacked). Something like this:

Is this possible?

from complex-upset.

No, not easily.

from complex-upset.

It seems potentially possible using "+ scale_fill_venn_mix ()" (from here: https://krassowski.github.io/complex-upset/articles/Examples_R.html#region-selection-modes)

The difference for the example here being that it seems you have to select the colour for each of the variables?

Visually, I think it could be incredibly useful to be able to plot the exclusive intersection and either inclusive intersection or union on a stacked bar, to more easily visualise this ratio. Would a the specific new function on R for this do the job?

Thanks

from complex-upset.

I think that stacking them would be misleading because the intersection would look to be larger than it actually is. I can imagine having them side-by-side rather than stacked.

from complex-upset.

Ah yes I see. Side by side could helpful....
Unless there's a way of showing the inclusive intersection bars with a line to stratify them by exclusive intersection and the 'extra' inclusive intersection number? i.e. similar to the plot above showing how each bar is stratified by mpaa, but instead of mpaa, by inclusive / exclusive intersection size???

from complex-upset.