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krassowski avatar krassowski commented on June 24, 2024
  1. This issue is not reproducible without specifying what M1_BinaryMatrix is.
  2. Please remove all unrelated code.
  3. Please clarify why a certain way of visualising data is correct and the other in is not.

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bagcik1lumc avatar bagcik1lumc commented on June 24, 2024

The UpSet plot only considers the observations containing a "1", while a "0" is also an observation and should be part of the inclusive intersection (alias: intersect).

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krassowski avatar krassowski commented on June 24, 2024

This does not answer my questions. I do not know what "1" is or "0". You need to provide a reproducible example.

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bagcik1lumc avatar bagcik1lumc commented on June 24, 2024

How can I provide that matrix? It's almost 1 gb

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krassowski avatar krassowski commented on June 24, 2024

You don't. Instead provide a minimal reproducible example.

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bagcik1lumc avatar bagcik1lumc commented on June 24, 2024

structure(list(KM-G4= c(0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L ),KM-E4= c(0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L),KM-G15= c(0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L),KM-E15= c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L),AC-G4= c(0L, 1L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 1L, 1L),AC-E4= c(0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L), AC-G15= c(0L, 1L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 1L, 1L), AC-E15= c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L), SC-G4= c(0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 0L),SC-E4= c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L),SC-G9= c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L),SC-E9 = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L)), row.names = c("0", "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24"), class = "data.frame")

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bagcik1lumc avatar bagcik1lumc commented on June 24, 2024

KM-G4 KM-E4 KM-G15 KM-E15 AC-G4 AC-E4 AC-G15 AC-E15 SC-G4 SC-E4 SC-G9 SC-E9 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 3 0 1 0 0 1 1 1 0 0 0 0 0 4 0 0 0 0 1 0 1 0 1 0 0 0 5 0 0 0 0 1 0 1 0 1 0 0 0 6 0 0 0 0 1 0 1 0 1 0 0 0 7 0 0 0 0 0 1 0 0 0 0 0 0 8 0 1 0 0 1 1 1 0 0 1 0 0 9 0 0 0 0 1 0 1 0 1 0 0 0

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krassowski avatar krassowski commented on June 24, 2024

The provided data is insufficient I am unable to help here without a self contained example; it is not clear why

"0"s should also be part of the intersection

since zero by definition indicates that an observation is NOT in the intersection.

If anyone is struggling with obtaining desired result please open a new issue providing sufficient detail and description.

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