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View Code? Open in Web Editor NEWTutorial for the analysis of scRNA-seq data in R
Tutorial for the analysis of scRNA-seq data in R
Hi,
I tried to run the code in the workflow.Rmd file and I keep getting an issue when I get to the dimensionality reduction step, from the line fit <- cmdscale(d, eig = TRUE, k = 2)
:
Error in cmdscale(d, eig = TRUE, k = 2) : NA unauthorized in 'd'
This is due to W
being an empty DataFrame (747 rows and 0 columns). The error seems to come from the line W <- colData(se)[, grepl("^W", colnames(colData(se)))]
where there is no name with W
. Do you know how to fix this error ? Thanks in advance.
Best,
N. L.
This will help decide whether need to integrate this option into clusterMany
Look at what MAST does to get residuals
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