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561_paper

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

armor_exome

armor_gto

armor_ichor

basilisk

Clone of the Bioconductor repository for the basilisk package.

bentobox

biocmeetup

bioctest

a test bioconductor package

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

cerebroapp

R package containing the Cerebro application.

chevreul

Set of tools for interacting with seurat objects as projects

chevreuldata

retinaCobrinik

cookiecutter-snakemake-workflow

A cookiecutter template for Snakemake workflows

copykat

copyscat

Inferring CNV data from single cell ATAC seq

copywriter

DNA copy number detection from off-target sequence data

dataeditr

An Interactive R Package for Viewing, Entering Filtering and Editing Data

dna-seq-gatk-variant-calling

dna-seq-varlociraptor

draft_issues

a place to collect draft issues

ds_scripts

eiad_build

Snakemake pipeline to create EiaD dataset for eyeIntegration

enrichmentbrowser

Seamless navigation through combined results of set-based and network-based enrichment analysis

eye_integration_reprex

flair

decorate your R code

ggreverse

Reverse a ggplot object back into code

hmmcopy

Source code for Bioconductor Package HMMcopy

ichorcna

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

infercnv

Inferring CNV from Single-Cell RNA-Seq